Array 1 81114-81650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHU010000001.1 Listeria innocua strain FSL W9-1219 NODE_1_length_1242909_cov_56.560015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 81114 29 96.6 35 .G........................... GTACTCCATATGTTCAAGAGTTGCCGACCAACTAG 81178 29 96.6 35 .G........................... AAGCTATATAAAATCAAATCTAAGGAGCTATCGCC 81242 29 93.1 34 ..............A.T............ CTCCAATCTTGATGTTTTTTAATCGTATTTTTCG 81305 29 93.1 34 ..........T...A.............. GGAGATTTTAAAATCTGATCATAATAACTCACTT 81368 29 100.0 36 ............................. TAGGTTGATTTAAGACCAATGTTTGATGTTGCTTCA 81433 29 100.0 37 ............................. ACCAAGTGGTCTTGATACACATTTGTGCCTGTTGTTT 81499 29 96.6 37 .....................T....... AAAATAGCAATGCCACAAACGGAATACGACAGAATTA 81565 29 100.0 29 ............................. TATAGACCTTTTCGACATTCGTTGGTTTA 81623 28 75.9 0 ..........T.C.C.A......-A...G | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 94.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : ACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAAACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCGGAGTTTAGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTAAGGTAAGATGGGAGTAAGAAGAAAAGCGCACG # Right flank : GCTCAATTTATAATCTTTGCTCACATTTAAAAATTACAGTTTTAATTTACATCCCTTAAAAAAATGCCTTTAACAACCATTGACATTTACCAGCTCTCTCAAAAAATCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGTAGTTTTATTCTATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATAC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 96671-98057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHU010000001.1 Listeria innocua strain FSL W9-1219 NODE_1_length_1242909_cov_56.560015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 96671 29 100.0 36 ............................. ATAATAATCGAAGCGGGAATTCAGATTTTGATGGCA 96736 29 100.0 35 ............................. ATACAAGATAATCGGGTATAAGAATGTGGAACGCT 96800 29 96.6 34 .................C........... AACGAAGGGCGAGCAAGGTTCGGCGCATCTCCGC 96863 29 100.0 37 ............................. AGAGTTTAATTTACCAATAAAGCATATTAGTAAGACA 96929 29 96.6 37 C............................ ACAGAACCGGGCGCTGATCCAGGATCAAACGGACAAA 96995 29 100.0 35 ............................. ATTCCCATCAACAACGGGCCGATAACAACCAACGC 97059 29 100.0 34 ............................. TCGTTTTTACCATCAAATTGAAAAACATCGTATT 97122 29 100.0 35 ............................. TTTATATACACACTCCCAGACAAATATACACCAGC 97186 29 100.0 36 ............................. GTGCCTTTTGTGATGGTATCAATCTCGGTCGTTAAT 97251 29 100.0 35 ............................. TCTGTAAGATATACTGCACCATCGAAGACAACAGA 97315 29 100.0 36 ............................. TTCCCACACGTCGTTGAAAACAGCACAGTTCACATA 97380 29 100.0 35 ............................. CCCAAAGAGCCACCAAAACCGCCAGTTTTTTCACC 97444 29 100.0 36 ............................. TCAAAAATAACAGAATCAGTATAAAAAGAGTCTGTA 97509 29 96.6 36 ..........T.................. AAGTGATCCTGTGCAACTTTTAATTTTTCTGCTTCG 97574 29 100.0 36 ............................. CCCTCATACTTCAAAATAGCTCCGCGCGGCAAATAG 97639 29 100.0 38 ............................. ATACAGCACCAGCCATCACTTTGCAGAAGAGGCGTTTC 97706 29 100.0 36 ............................. CTTATTCCAAATTTGGGAGAGAACTCGCGGACGAAA 97771 29 100.0 35 ............................. AAATTATCCTTATTTTCCTCAAACCAATCAGCTAC 97835 29 96.6 36 ..........A.................. GAGACAATCTTGGGTATTGCGTTAGCCGCCCTTTGA 97900 29 100.0 35 ............................. GTTCTAATTGAATGGGCGCCATTGTTGGCAAAAGT 97964 29 100.0 35 ............................. TTTGTCAATACACGATAACATCTCCTTACATTGCT 98028 29 93.1 0 .......................A....C | C [98051] ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAATTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGATAAAATAGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //