Array 1 70191-68450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLEO010000021.1 Chryseobacterium lactis strain CL2 NODE_21_length_106579_cov_99.357280, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 70190 47 100.0 30 ............................................... CCGGAAGGCGTGGCAAGCTCTATCCGATGC 70113 47 100.0 30 ............................................... ACTTTTTCTTACTATAAATTTCATATTTAT 70036 47 100.0 30 ............................................... CTAATGAAACAAGTCATGTTTGCCCACAGT 69959 47 100.0 30 ............................................... ATACAGGGGTTTGCTAAAATCATGCGAATT 69882 47 100.0 30 ............................................... CGGCCCAGACGACTGGATGGTCCATGTCCT 69805 47 100.0 30 ............................................... CCTGACGATCCAAAGGAGGCAATAGACCTG 69728 47 100.0 30 ............................................... TAGATATTAATAGATCACTGAAAACAAATA 69651 47 100.0 30 ............................................... TTCAGTATAATTTATTTGTTTGGGTTGTGG 69574 47 100.0 30 ............................................... CGTAACCATTTACAGTACTGAGCGCAACCG 69497 47 100.0 30 ............................................... AGTTAATGCTTATTGATGGGTACCCGTTCA 69420 47 100.0 30 ............................................... AGGCTGAACGCAAGGAAAGAGAAGAGGCCC 69343 47 100.0 30 ............................................... AGTTACATCTGGACGCTGTGGACCTTGTTA 69266 47 100.0 30 ............................................... GAAAATAGAAATCAGCACAACAACAAAAGA 69189 47 100.0 30 ............................................... AGTACTTGACATTGAAACTACAGACTTTCT 69112 47 100.0 30 ............................................... GAGGCAGAACAGGTGGCGTTAAACCAATTC 69035 47 100.0 30 ............................................... GTTATTACTTTTAAACCTGAACCAGGTATC 68958 47 100.0 30 ............................................... AACAAATAAACGAGACAATGGGTACAACTG 68881 47 100.0 30 ............................................... TATAATCGGTGAAAAGATACAGGATGAGTG 68804 47 100.0 30 ............................................... ATTTGAATTCAATGAAAGCGAATACTACAC 68727 47 100.0 30 ............................................... AGGGATGAGAATCTAATGAATCAAATCTCT 68650 47 100.0 30 ............................................... AGAGTATCAGGAAACGTTTAGCGTATACAC 68573 47 100.0 30 ............................................... ATTTTTATGCCTGCTAATGCCGGACAAATC 68496 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 100.0 30 GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Left flank : TTAATTGATCATTAAATGTCTTTTACCTGTATTTTTTATCTGCTTATCGCCAACTATGATGGCAGAAATTTCAAATCCAAAGAAATCGTAATTAATGAAGATTGTCAATTTCTCAAAATTCAATAACTCACTGATTAACTAAGATTTGTAAATTAAAACCATAAATCTCCTTTTTGAAACAAAGAGGACAGTTATTCAAAATAATTGCTTAAATTCACTATACATAAAATACTAATAATCATGGAAAATTTAAGAAAAATTACAAGAACCGGATTGAAATCAATTCAAGGAGGAATAGAAAGATGCATTCAAGACTGCTTTCAGGAAGGATACCGAAAATGCTGTATCAAAGGAAAGCCTTATGTATGCATTCCGACTAACCAATTGTGTGTATAAAAAAAATTGGGTATAAATTTAAGACCATTTAGTAGATGGTCTTTTTTGTTATTATTTTTGTGATTAGTCACAGCTAACCACGGAACCCAGGACCGTTCTTTCCG # Right flank : CTCAAAATTTAATCCGTTGAAATTCAACGGATTTATTGTTTATTTAGAATTTAAAAATTAGAATAATTCAAGCTGTTGGAACGTTGGTGGTGGTTCTTCTTTATTCCTGGCAAAGAAGATCTCAATGTCACCAAACTGCTTGTCTGTAATACACATAATGGCAACTTTCCCAGCTTTTGGAAGCATAAATTTTACTCTTTTAATATGAACCTCCGCATTTTCACGGCTTGGACAGTGCCGTACATACATCGAAAACTGAAATAAAGTAAACCCATCATCAATGAGTGCCTTCCGAAAACGGTTCGCATCTTTCATATTCACTTTGGTCTCAGTTGGGAGATCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGAATTCATATCAGTTCAGGATAAGAGATCAGGCGCTTTTCTCCCGTATAACATTTATACAGTGATGTAGCTGTTGTTTTTACCGCAACCAACAATGGTCTGGTTTTACCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 256746-257573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLEO010000005.1 Chryseobacterium lactis strain CL2 NODE_5_length_268379_cov_101.213841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 256746 36 91.7 30 .....G....T............T............ TCATGTACCAGAAAAACCGGGAAGCTAAAT 256812 36 94.4 30 .....G....T......................... CAGGTTCATCATGTGTTATTAATGGGGATG 256878 36 100.0 30 .................................... TTATACTTTGGAGCAGGAATAGACACCACA 256944 36 100.0 29 .................................... ATCCTGTGTTTATTACCCCTTCAGCTAAT 257009 36 88.9 31 ..........T..A.......A.........T.... CTAGTGCTCAATACGGTAAATGGCTTTTTGG 257076 36 97.2 30 ......................C............. TTTAAGACGAATAAACCAACCTATAAGGCC 257142 36 100.0 30 .................................... CTATTTGAATGATGAACCTTTTTGGATTAT 257208 36 94.4 30 ...................T........T....... TTTAAGAGGATTGTCTAACAAATCATTGGC 257274 36 97.2 30 ...................T................ TTCAGTCGTGATTTTTTGATTGAACAATTA 257340 36 100.0 30 .................................... GGGCTAACGTCATGCCAAAATGAAACGACT 257406 36 100.0 30 .................................... TATTTAGGTTAATATATGAACATGCAAAAT 257472 36 97.2 30 ...................T................ TTCAGTCGTGATTTTTTGATTGAACAATTA 257538 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 97.0 30 GTTGTTAGTACCCTTCAAACTGTGATACGTCCCAAC # Left flank : GAAGCCGTTACTTGTATGTTTTATGAAGATTATCCCTGTTTTAATTTTGCATTTTCCGCCTTTAAAATGGTGATTTGTTCTTTTAAAAGTTTGATGTACTCTTGCTGACTTTCTAATAGATAATTTGGGATATTACAAAACTGATTATAGTTTATACTTGCATTATCATTGAAGCTTGCGCTGTCATTAAGTGTCGTATTTTGATTATTTTGAGCAGTTCGCTCTTCTTTAATATCTTCTACAGAAACATCCAAAGCTTTGGCTATTTTCTCCCATTCGTCATCAAATATTTTAACGTCTCCACTTTCTTTTCTGCTGTAGTTGGAGACATCAGTTGCGATAATATCAGCAATCTGCTGTTGTGTAAAACCTTTCTGCTTTCTTGTAGTTCTTAGTTTCTCCATTGTCATAGGGTGGGTGTGTTTTTTACAAATATAGAAAAAATAGCGGTAACAGGTAATAATAGGAAAATTATTTCTTGAGCCTGGCCGCTATTTTAG # Right flank : CGGGCTAACGTCATGCCAAAATGAAACGACTGTTGTTAGTACCCTTCAAACTGTGATACGTCCCAACNNNNNNNNNNTACGTCCCAACGGGCTAACGTCATGCCAAAATGAAACGACTGTTGTTAGTACCCTTCAAACTGTGATACGTCCCAACAGGATTAATTCATAAACGTGACGGAGTGTTGTTGTTAGTACCCTTCAAACTGTGATACGTCCCAACACTTTAGTGTTTAACTACTAAAATCATTACGTTGTTAGTACCCTTCAAATTGTGATACATTCATTCCATCTATTTATTGTGATCCTCACATAATCAAATTTATATGCTAATTTCAAAGAGCATTAAAATAATAAACTAGCTATTTTCTTTTAGTTTTTGAACAGCTAATTTTATCAAGTTCAGATATAGTTTTGCCGCAGTATTATTTTGTATTTCCGGATAGTTTTTCCTGATGAAATTGTAAAACTGTACTTCCGGCAATTGGTTATGAGCAAACTGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGTACCCTTCAAACTGTGATACGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 257691-257858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLEO010000005.1 Chryseobacterium lactis strain CL2 NODE_5_length_268379_cov_101.213841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 257691 36 100.0 30 .................................... AGGATTAATTCATAAACGTGACGGAGTGTT 257757 36 100.0 30 .................................... ACTTTAGTGTTTAACTACTAAAATCATTAC 257823 36 83.3 0 ...................T........A.T.ATT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTGTTAGTACCCTTCAAACTGTGATACGTCCCAAC # Left flank : GAACCTTTTTGGATTATGTTGTTAGTACCCTTCAAATTGTGATACTTCCCAACTTTAAGAGGATTGTCTAACAAATCATTGGCGTTGTTAGTACCCTTCAAATTGTGATACGTCCCAACTTCAGTCGTGATTTTTTGATTGAACAATTAGTTGTTAGTACCCTTCAAACTGTGATACGTCCCAACGGGCTAACGTCATGCCAAAATGAAACGACTGTTGTTAGTACCCTTCAAACTGTGATACGTCCCAACTATTTAGGTTAATATATGAACATGCAAAATGTTGTTAGTACCCTTCAAATTGTGATACGTCCCAACTTCAGTCGTGATTTTTTGATTGAACAATTAGTTGTTAGTACCCTTCAAACTGTGATACGTCCCAACGGGCTAACGTCATGCCAAAATGAAACGACTGTTGTTAGTACCCTTCAAACTGTGATACGTCCCAACNNNNNNNNNNTACGTCCCAACGGGCTAACGTCATGCCAAAATGAAACGACT # Right flank : CCATCTATTTATTGTGATCCTCACATAATCAAATTTATATGCTAATTTCAAAGAGCATTAAAATAATAAACTAGCTATTTTCTTTTAGTTTTTGAACAGCTAATTTTATCAAGTTCAGATATAGTTTTGCCGCAGTATTATTTTGTATTTCCGGATAGTTTTTCCTGATGAAATTGTAAAACTGTACTTCCGGCAATTGGTTATGAGCAAACTGGTTTCTAATCATTATGACCAGAAAAAGGAGCTGTACCATTTCAGATTTTGTTTCAAGTATTTCAGAAGGAAGCGTTTTAAAGTCATTTTCCTTGAGGCTTTCAAGCCAAAAGTCTTCGTCTTCCTTATAGAAATTAGAGTTTTTTCTTAAAATACCGTTCACTACATACATTTTGAAGTTAGGATGCCAGGCATTCTTTTGAACTTCCATCTCAAACTCTCTGGGATGGTTGATCCCGTCCCAAGGCCAATTGGATAAAGTCTGCAATTCCAGATTCTGGATTTCT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGTACCCTTCAAACTGTGATACGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //