Array 1 2734409-2736897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSA010000004.1 Pseudomonas aeruginosa strain PA765 Scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2734409 28 100.0 32 ............................ TGCAAGACCTGCTAGCAGAAAGAGTCACCCTT 2734469 28 100.0 33 ............................ GAGGTCGACGGCAAAGAGTGCCCGATGACTCAG 2734530 28 100.0 32 ............................ TGTTCCAACTCGATGCTGCGTGCGGTGCTCCG 2734590 28 100.0 32 ............................ TGTTCGAGGAATTCATCGAGCACCACAAGGAG 2734650 28 100.0 32 ............................ GGGAGGGAAGGGCAGGCAGAAACGAAAAGCCC 2734710 28 100.0 32 ............................ TCGAGCTTGTCGAATCCCCTCAAAAACTCCCC 2734770 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 2734830 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 2734890 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 2734950 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 2735010 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 2735070 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2735130 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 2735190 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 2735250 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 2735310 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 2735370 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 2735430 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 2735490 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 2735550 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 2735610 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 2735670 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 2735730 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 2735790 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 2735850 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 2735910 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 2735970 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 2736030 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 2736090 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 2736150 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 2736210 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 2736270 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 2736330 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 2736390 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 2736450 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 2736510 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2736570 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2736630 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2736690 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2736750 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2736810 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2736870 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2746770-2745422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSA010000004.1 Pseudomonas aeruginosa strain PA765 Scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2746769 28 100.0 32 ............................ AACAATGGAAGACTTGCAGTCAGCATTCAGCA 2746709 28 100.0 32 ............................ TTCACCAAGGAGTTGTACGCATTCCCCGACAA 2746649 28 100.0 32 ............................ TGAATCTCAGACGCCTTCACCATGCACGACAA 2746589 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2746529 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2746469 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 2746409 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 2746349 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 2746289 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 2746229 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 2746169 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 2746109 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 2746049 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2745989 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2745929 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2745869 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2745809 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2745749 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2745689 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2745629 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2745569 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2745509 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2745449 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //