Array 1 53523-55767 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBFU01000008.1 Legionella pneumophila strain NMB001851 503204-11_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 53523 32 100.0 35 ................................ CAATCAAAGTGATTAAATCCGAAAATCAATCCACA 53590 32 100.0 37 ................................ TAGCCGAACAAGCCATGTATGCGTACCCACGTGGAAA 53659 32 100.0 34 ................................ CGCTATCGAGCTATTAAAAATAAACAAAACAGCG 53725 32 100.0 35 ................................ ATTCTCAGTAATTGTTTTTACTCTTGTGTTATTAT 53792 32 100.0 35 ................................ AATTTTCTCAACATTCAGTAAGTGAGGTTTTGCAG 53859 32 100.0 35 ................................ ATGCCTAACAGTAGCTAGCATATACGCAGCATGGC 53926 32 100.0 35 ................................ CTGTTATTGGTTGCATTGTTTTGTAGTGAGATTCG 53993 32 100.0 35 ................................ TGTTGGTATAGAAGAACCATCCCATAATTGATTAA 54060 32 100.0 35 ................................ TTATTTAAAATTTGGCGTAGACTGGTAGGTCAATG 54127 32 100.0 33 ................................ ACTACTAATATAGAAGTTATAGACTTAGATAAA 54192 32 100.0 36 ................................ ATTTTTATCGCGCACTATCCAAATTAAGTCTGCGAT 54260 32 100.0 36 ................................ CCCCGATCCTATTGTCGGTAAACCCGACGCACTAGT 54328 32 100.0 36 ................................ CGATAAAGCCCGCATGGAATCATTAAAACCCTTCGC 54396 32 100.0 35 ................................ ACACCATAGGGTGGGTCTGTAATCATTGTGTTCGG 54463 32 100.0 36 ................................ TAAGGAGAATATAATGCAAACTTTACATATACCAAC 54531 32 100.0 35 ................................ GTACCACTACTTCTAACGGCTTTTACCATCATAGC 54598 32 100.0 35 ................................ AATGTTATGTGCCAACAAAAATCGATGTATCAAAT 54665 32 100.0 35 ................................ TTCGGTATATTCATTCTCATTTTGTTTTTTTGGTT 54732 32 100.0 35 ................................ CCTGCGTCCGGCGACAATTTAGGCGCAGGAGTAGA 54799 32 100.0 35 ................................ TACGATTGTTTTACCGCGAGGATAAGCGTACAAAG 54866 32 100.0 35 ................................ TGCTCAAGAGATGGGGAACCATCTCACCCTGCAAT 54933 32 100.0 35 ................................ AATGATGAATTAGTTAATGAGATCAAAGAAGAAAC 55000 32 100.0 33 ................................ AAATTCGACTGCTAAGTTATAACTGTCGGTATA 55065 32 100.0 35 ................................ CAGAAAAGTTAAAACAGAATATATCTTAGAACGTT 55132 32 100.0 35 ................................ AAGAATTTTACTAGCATAATGAAGAGGGGATAATC 55199 32 100.0 37 ................................ ATGTCTAATCCTCATAATTTGGAATGGGTATGAAATG 55268 32 100.0 35 ................................ AAAACAATAGAATAATTCATTTTATTGTTCCTCAA 55335 32 100.0 35 ................................ ATCTCGCCTTGGAATTTGGTGCACACTAACTTCTA 55402 32 100.0 35 ................................ TGCCAAAAACGCTACTAGACGGCCTGCCGGCGGTT 55469 32 100.0 35 ................................ TTAAATCCACTATCACTAAAACAGATTAATTATTA 55536 32 100.0 34 ................................ CAAACCTCATTGGTATTTCAAGCAGCGGTTTCTT 55602 32 100.0 35 ................................ GACCTTGACTTGCTTGGTTTTGACGAAAACGAAAT 55669 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 55736 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.7 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : CACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //