Array 1 15567-15265 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZH01000144.1 Helicobacter cinaedi strain P14D1067 entry144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 15566 37 100.0 29 ..................................... GGAAAGATTTACCTCTATGGAAAATCGTA 15500 37 100.0 30 ..................................... TATCACACAAGAGGAAGCATTACAAGAACT 15433 37 100.0 29 ..................................... AAAAATCCTCCTATTATTCCTAAAGTTAG 15367 37 100.0 29 ..................................... TTTATGATTTTGTATTCCACATAGCAGCA 15301 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================== ================== 5 37 99.5 30 GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Left flank : CTTCTTAAACTTCTATATGCTAGAATTTAAATCCCATTGCTCTGGGTAATGCTTG # Right flank : GGCTCTCTGTTGGTGCCTATAGATAGGGATTTCAAAGGATTTTAAGCTGGAAATTACCTGAAATCCTTTATAATTCGCGACATAGAAGTTTAAGAAGGGACTAAAATAAGGGAGTAAGGGGTCTTCCGCAGGGTAAATCATATCCCTATCAAAACCCTAGAATTCAAATAGGCTTGGTTGCCTATTTTTGATTTTTTGTTTTGGTTGTGTAGTAGTTGTATTCAATTCTTCTTGTTTTTGATACTCCATACCATAGCGGTAATCACCCGCATTTTCGTCAAAGTCAAATAGCACAAGATTTTTATCTTCATTAACATTCTCATTAAATGATGGGTTTCCTAATAATATTTCTATATTGTCGAATTGTCTTTCTGTGATGATAAGTGCGCGGACATTACCATAAGGTGGAAGCACCTTTTTTACAACATTTAGAGAGCTTTTTGCCGAGCTTAACCCTTTGCATATTTTCATATACACGCTAAATTGCATCATAAAAAAGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 15154-14854 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZH01000072.1 Helicobacter cinaedi strain P14D1067 entry072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 15153 37 100.0 29 ..................................... CATCTTTTGTGGCTGCCTTTGAGCTGACA 15087 37 100.0 29 ..................................... CAGCATTCACACCGCCCACGAACACATCT 15021 37 97.3 29 T.................................... TCAATCGTTTGCGTCCTAAGTTTGAAAGC 14955 37 100.0 29 ..................................... TACACGCTCACAGCCCATAAGCTAGATTC 14889 35 86.5 0 .....................A--.........T.T. | T [14859] ========== ====== ====== ====== ===================================== ============================= ================== 5 37 96.8 29 AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : TATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGT # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAATACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 293-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZH01000074.1 Helicobacter cinaedi strain P14D1067 entry074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 292 36 97.2 31 A................................... TGGTATAATATAAAGGGTGTAGCGAAATACT 225 36 100.0 30 .................................... ATGACAAGTCTATACCCGTTTTTATACTCG 159 36 100.0 30 .................................... ATAATTGTAGTTTGCTAGTAGAAAATTATA 93 36 100.0 30 .................................... TTAAATCCCATTGCTCTGGGTAATGCTTGT 27 27 75.0 0 ...........................--------- | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 94.4 30 GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Left flank : AGCGAAAACAATAAAAGTTTTTTATCCATACTCATAGAAGAAGGACTCAAAGATTCTAGCTCTCTCCTAAAATCACTAGATAAAATATCATTAACTTTTAGCAGTGTATTGCCCAACAAATTGCACTTATCTTCAAATGTTTTATTCTTAATCTCGCTCATTGTTAGCCCCTTTTTGTTTTTGAGATTCAATCAATCCTTTGCCTTTTTCAAGTCCTTTGTTTGTCAGCTCACTTGTTTTTTCTTTAACCTTATCTAGCATTCTGCTTTTTTTCAATGGCTTCTTTTGCTTCAATGCCCTTTTCTTTCAATTTAGAAAACGCAGAGCCAAATGAAAAGCCATTTGTTGTTTGCTTTTGATTTTCATCAGCATAACTTTTAAAGTCATTTAGGGCATTAAAATTCTGCTTTGACTCAACCACACTCTGTGAAGTGTTACTATCGCCATCTTGTGTCTCTAGCTCTGCCATTATTCGTATCCAATTGGCTTCAATCTCACTA # Right flank : A # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //