Array 1 8958-9597 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXZ01000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X135 NODE_46_length_37347_cov_83.172638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8958 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 9019 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 9080 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 9141 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 9202 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 9263 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 9324 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 9385 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 9446 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9507 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9568 29 96.6 0 A............................ | A [9594] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95668-97220 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXZ01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X135 NODE_7_length_104404_cov_80.022770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95668 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 95729 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 95790 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 95851 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 95912 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 95973 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 96034 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 96095 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 96156 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 96217 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 96278 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 96339 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96400 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96461 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96522 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96583 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96644 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96705 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96766 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96827 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96888 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96949 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 97010 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97071 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97132 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97193 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //