Array 1 179569-177216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIBZ010000001.1 Methylocaldum sp. RMAD-M Ga0454163_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 179568 29 100.0 32 ............................. ATGCCCTGCTCCTTTTTCCGAGCCCGGTACGC 179507 29 100.0 32 ............................. TCACTACTAATTCTGCGGGGGATGTCATCAAT 179446 29 100.0 32 ............................. GGATTCGTTGCAGGTTACGCCTCAGAGTATAC 179385 29 100.0 32 ............................. CTCTTTCCCCCGGTAAATATCCCTACCCTGCT 179324 29 100.0 32 ............................. ATTTGTCTCGAAATATTCTTGTGTAGTGTTGC 179263 29 100.0 32 ............................. TGTCTTTCCGCCGCGCTCATGATTGAGTTCGC 179202 29 100.0 32 ............................. AGATGCGAGACAGGATACGCGGAGTAAGAGCA 179141 29 100.0 32 ............................. AGCGTCGGCCCAAAACCACCGATCCTTGATCA 179080 29 100.0 32 ............................. TAATAGCAACAGCTAACTACGAACGGGAGAAA 179019 29 100.0 32 ............................. CTCAGAGAATCTTTGATATCCGACAGGAGATT 178958 29 100.0 33 ............................. AGCACGGCCCTGGACCATTAACCGGGAACTTGC 178896 29 100.0 32 ............................. GGGACTTTTGCGACGATTTACGCCGGTTATGG 178835 29 100.0 32 ............................. CCCCCGAGCAAGTCAACACCCCGCCTGGAGCG 178774 29 100.0 32 ............................. TTGCCACTCTTTGCAGCATGGAATAATCGAAA 178713 29 100.0 32 ............................. GAAAAACAGGACACAGGCCGCTGCGCAGCGGC 178652 29 100.0 32 ............................. TCACAATGCGGGGCGCGCCAGCGGGCGCGTCT 178591 29 100.0 32 ............................. GTCGCGGGGAAGCGTTTTACCGAGCAGCGTCA 178530 29 100.0 32 ............................. CCGAAAAAGCCGGGATGAGCCTGAACGAGGCG 178469 29 100.0 32 ............................. TTCAGGCGGTACCTGAATAATCATTGGAGAAT 178408 29 100.0 32 ............................. GGGTCGAAAAACAGATCGCAGTTGACTATCTG 178347 29 100.0 32 ............................. GAAAGGGGCTGGCCGTAAACCGAAGCCGGCAT 178286 29 100.0 32 ............................. GCCGTTGCCGAGGTCGGCACGTTCGGCGCGAA 178225 29 100.0 32 ............................. CGCCCGTATAAGTTGCCTAAGCGGGTATTCGA 178164 29 100.0 32 ............................. GCCGAAATCATCTGGCACTCCGATGGCAATAT 178103 29 100.0 32 ............................. GCAGACCAAATCACATCATGATCAGCGAGGAC 178042 29 100.0 32 ............................. GTGGAAAAGACGGCGTTTACATTTCCATAGTC 177981 29 96.6 33 ...........A................. CCCGCAATTCGTTGAACGTGATGAGATCGTCGC 177919 29 96.6 32 ...........A................. ATTGTCAGCCCGCCCGGCCCCTTGCTTTCGAG 177858 29 96.6 32 ...........A................. GTCCGGCATCCGAGCGGCGGAATGACCTATCG 177797 29 96.6 33 ...........A................. CCGATGGCAATAGCCGCTAAGCCCAACATAGCC 177735 29 96.6 32 ...........A................. CCCAGTGCGAATACCACGATTACCCCAATAGC 177674 29 96.6 33 ...........A................. AATAAAACGACGGTTACGCCTCAGGCGGATGGC 177612 29 96.6 32 ...........A................. GTCAATCCGCTGAAAACTGCGCCAGCAATCGA 177551 29 96.6 32 ...........A................. TATGCGGAACGCCTGCAAGCCGAGGACCGCAA 177490 29 93.1 94 ...........A................T GGTAGTCCGTTCCAGGGCACCGCAAGTACACTTCCCTGTGGCCTCAGCCAGCCCGCCCATCCGGGGCGGGCGTTCGCGGCTCCTACGCCCGCCG 177367 29 82.8 94 ..CAC......A.G............... GATAGTCCGTTCCAGGGCACCGCAAGTACACTTCCCTGTGGCCTCAGCCAGCCCGCCCATCCGGGGCGGGCGTTCGCGGCTCCTACGCCCGCCG 177244 29 82.8 0 ..CAC......A.G............... | ========== ====== ====== ====== ============================= ============================================================================================== ================== 37 29 98.1 36 CTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : ACCATCGAAGACGTGCTCGCCGCGGGCGGCCTGGAACCGCCGGAAACCCCGGAAGACGCCGTCGGCCCCGCCATCCCCAACCCCAAGAGTCTCGGCGATGCTGGTCATCGTGGTTGAAAACGTTCCTCCCCGGCTGCGCGGCCGCCTGGGCGTGTGGCTGGTGGAAATTCGCGCCGGCGTTTACGTCGGCGATTTGTCGAAGCGTGTGCGCGAGATGCTCTGGACGCAAGTCGAAGCCGGCCTCGGAGACGGCAACGCCGTGATGGTATGGTCCACCAATACGGAATCGGGCTTCGACTTCGTAACCCTCGGCAAGAACCGGCGCATGCCGGTCGAACTGGACGGCCTGAAACTGGTGTCCTTCTATCCTCCCGAACCGGCCAACGGAGAGGGAAATAATGCTCTTTAACAACCCGGATTTTTCATTTTCAAAGCGGCGAATCGCCGGTAGAATTTCGACCGGTATTTTTTGCCAGTCCTAACAATAGGTTAGAAATGGT # Right flank : GATAGTCCGTTCCAGGGCACCGCAAGTACACTTCCCTGTGGCCTCAGCCAGCCCGCCCGTCCGGGGCGGGCGTTCGCGGTTCCTATGCGCGCGGCTCGCCTCCACGTACGTTGTTCTACCAGTTCAAGCGCTGCGCGCTGTCCTTGATAATATTCGTTTCAATATGCCTACAGCCTGCTGTTTTCGGTTGATCTTCATATATTTGCCCGACGCGTCTCCGCTCATGTTCGCTCAGAGCAAAGAGTGCACGCCCATATTCAGACGCGATTTCGCCTTTGTTCAAACTCTTGAACTTGGAAACCGCCTTTCACCGCTCGGATCGACTCAAAAAGTCTCATGAATCCCGAGTGTTCCGGCTTTCAGCTTCCTCAACGTTTGAGGGGAGCCGCTACGCACCCGATCCTGGTTGCGGGAGACTACCCGGTCGCGGCTGTGCGCCGGCACCGCTCCCCGTCTCGCGCTTCTTCGACGGGGCTCTGGGCATACCCTTCGACTCGGGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 289989-293050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIBZ010000002.1 Methylocaldum sp. RMAD-M Ga0454163_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 289989 37 100.0 33 ..................................... ATCTTGGCATAAACAAAAACGATTTCAATGCGA 290059 37 100.0 36 ..................................... GCCGTTCGAGTCGGCCAATACGATTAGGTCAGCGTC 290132 37 100.0 35 ..................................... AAAACATGTCGAACATTCACGCCGAATTTAATCGT 290204 37 100.0 34 ..................................... TAACGGCGGAGAAAGTAAAAATGAATGAGTTTAG 290275 37 100.0 35 ..................................... ATCACTCGGGCGGCATCGCGGGGTTACGACCGGAT 290347 37 100.0 34 ..................................... ATGAAATCCGGTATAAGCAGACAGGCGGTAGAAT 290418 37 100.0 36 ..................................... CGTAGCGCGGGACGTGGAAAAGACCAAGAAAACGGG 290491 37 100.0 35 ..................................... CGAGGTGTCGGCCAAGGTTGAAGTGTTGCCGTGAG 290563 37 100.0 37 ..................................... TACAAGGCTATTCATTGGGGAGAATCAACAATTGTTT 290637 37 100.0 35 ..................................... AGAAACGGTTGCATAGTATTTGTTTTGTTTTTTTT 290709 37 100.0 34 ..................................... ACGAGTCAGTACGGCGACAGCACCCGCTACAAGG 290780 37 100.0 37 ..................................... AAGAGCGAATCGGACGTAAAAAAATAACCCCAATAGC 290854 37 100.0 34 ..................................... TTTACTATGCGCGATAATGGCTCCCGTTGCACAA 290925 37 100.0 35 ..................................... GTACAATTGCGGCCCATATTCCCGCGTAACGGTGC 290997 37 100.0 37 ..................................... CCGAAACTGGCCAATCTTGTCATACCACTCTTCAAAG 291071 37 100.0 36 ..................................... ACCGAACTGTTCGAGGGATTTACCAGCAGCACGGGC 291144 37 100.0 35 ..................................... TAAATCGTAAAACGTGTTGAATTTTAATTTCAAGC 291216 37 100.0 35 ..................................... GCACTACGAATTAACAGCGTTTGACGCTTTAACGC 291288 37 100.0 36 ..................................... AGCATGAACATTGAAAAATTCGTGAGTAACAATCGA 291361 37 100.0 35 ..................................... ATCGGCTGCAATCGCGGATGCTCTCCCTGCTGAAG 291433 37 100.0 34 ..................................... TCGTCCCAGCCGCATTTCGAGGTGCGGGAGCAGT 291504 37 100.0 34 ..................................... TTTTTCCATGGCTGCGATGAGTTCGCCCAAATAC 291575 37 100.0 34 ..................................... ACCGTCATCCCGGCCGTGACCTCCGGATTACCGT 291646 37 100.0 34 ..................................... ACGAATCCCGCCGGCACCGCGAGGACGTCGGTCC 291717 37 100.0 35 ..................................... CGATCGGGCTGACCTTCCGAGACAATTACCGGACC 291789 37 100.0 37 ..................................... ACGTCGGATGCCGGCCTCTCGAAGGAGACCGCGGAGC 291863 37 100.0 35 ..................................... TCGTCACTCATGAGGCAATCGGCAGTGCGGATGGG 291935 37 100.0 36 ..................................... CTCGCACGAGGCGCTTAGAAACGGCTGGCTGGGGCC 292008 37 100.0 35 ..................................... ACATAGCGCCATATTCCGGCATCCCTATAGCCGGG 292080 37 100.0 37 ..................................... CGCACGCCGAAGCCGGCGGCCACCATCGCCGAGGGCG 292154 37 100.0 35 ..................................... TTGTGCCCTTCGGTATCTTTGTCCCATAGATTCTA 292226 37 100.0 35 ..................................... ATCAGTCATCCTCCTGGTATTGCAAAGTGCCGGGC 292298 37 100.0 35 ..................................... ACGGCCTGATCGATGTCGTAGCCGCGGCTCAGAAG 292370 37 100.0 34 ..................................... TACGGCCAGGACATTTTCATCGACGTGGCCCACC 292441 37 100.0 34 ..................................... ACCAGATCGCCGATCAGCTCGGCCACGGTCCTGA 292512 37 100.0 34 ..................................... ATTCCACGGCCAGGCGTCTGGCTGTTTCCACACC 292583 37 100.0 34 ..................................... TTCGCCGCGGTCGTGCTGTGGCTGATTCATGCTC 292654 37 100.0 34 ..................................... TTTGAGCGGGATGTGCGGCCACCCGCCGTAATTG 292725 37 100.0 35 ..................................... ACGCACTCGTAAACGATGTGCGCCGGGTTGGCGTG 292797 37 100.0 36 ..................................... CAGTTAGCCGCTACATCGATGCAATATCAAGCGGCG 292870 37 100.0 34 ..................................... TCAAGTCTCAGCGTTTAAAAATCCGCGTTTCCAT 292941 37 100.0 36 ..................................... CGCTGTTGGACGCGTTGATTTTTCCTCAGCTTGACG 293014 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 43 37 100.0 35 GTATCTCCCGGCTTAATAGCCGGGAGTGGATTGAAAC # Left flank : CTGAACCGCTGAGGTAAACATGTTGCTTCTGGTCAGTTACGACGTCTCGACCGAAACCTCGGAAGGCCGCCGACGGCTCCGGCGAGTCGCCAAGGTCTGCCTCAACTACGGTCAGCGTGTGCAAAAATCGGTGTTCGAGTGCAAGGTCGAGCCGATGCAACTGGAAATCTTGAAGAACGACCTGCTGGACATCATCAATGAAGAGGAAGACAGCTTGCGGATTTACCGCATCGTAGAGCCGCTTGAAAAAAACGTCATGGAATTCGGCAAGTTCAAGGCGGTCGACTTTACGGATACCTTGATCGTATGAGTGCTCTGCCGATGCGCGAACTGGAAGCAATGGCAAAATGCCGGGACATTCGCGCAGACCATAAACTTATGACTTTATTCCCTTTCGTTGCCAAGAATTCAAAATTTCTTCCGGCTTTGACACTCCCGGTCCTCCCGTTCGCGCTTTCCTGCCGTTTTTTCCTGATTTATTCTTGCTTTGCCGAAAGGCT # Right flank : CTTCACCAGGGAAATACCAACATCCCAGTCGAGACCGTTAAGGAAGCTCTGATCAAGTCCTTCGACAGGCTCAGGACGAACGGTAATGTATTGATTCCGTTCGTGGTGAGCCCTTCGACTCGGCTCAGGACAGGCTTGTCGAACGCTCTCCTGAGCCTGTCGAAGGGGCATGAACGGAATCCACTTGTTCAGAGCTTCCTTAAGACGTGAGGCGCGGTGCGAGCAAGATGGGGAGGTAGCGCACCAGAAACAGCAGATAGGCCGCGACCCAGAACCCTATCGCGGCTAACATGGGTAGACCATCCGGTTGCGCGAAAAGCCGGAAAACGGTTCCGAGGGTCATCATTGCGAAAGCGGCGGTCATCGAAGGAAAGGCTCGCAATGGCCGTCCGGTGTGGCCGAGCGCGACTCGAGCCGCGACACCCAGAATCATCGTGCCGATAGCCCCGTAGCCGAGCGCATGCAGACCGCTATCCCAAAGTCCCGGATGATCGAACAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTTAATAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.80,-15.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 981-527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIBZ010000003.1 Methylocaldum sp. RMAD-M Ga0454163_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 980 36 100.0 33 .................................... GTGTTTTGCAGCTTGCGCTTGCTGTCATCGCTT 911 36 100.0 35 .................................... TCAGGACCGTTGACCATTTCAGCGTTGAGAATGGC 840 36 100.0 34 .................................... GCCCGATTCACCCGGCGTTGAGCGTCCGAACGGT 770 36 100.0 35 .................................... CCGTTTTCGGTGAGGTAGTCATATACCTCACCGAT 699 36 100.0 33 .................................... GTAATCAGCGTCGGTAACTTCTATGATGTCTAA 630 36 100.0 32 .................................... TTCCTGCTAGCGCTTGCGTTGGACATCCCTAA 562 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 7 36 100.0 34 GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Left flank : TGGCTGGAACAGTACGCGTACAGTCTGGTCCAGAGCCTGAAAAGCGAACTCAAAGCGATACAGGACATCGGCCGAGGGCTGGAAGTCGAGCGGCAAAACGGCGCCGAGCGGATTCGCAATGAACTGGACGTTGCCTTTCTCGCGGAAAACCGGCTGTACATCGTCGAGTGCAAAACCCGCCAGTTCAGGGACGATATCGAGACCGGCGGTGCGGGCGCCGATGCAATCTATCGGCTCGACGCGCTTTCCAACCTCCTGGGCGGTCTCCAGGCAAAGGCCATGCTGGTCAGTTATCAGCCCCTGTCCACCGCCATTCAAGATCGCGCCCGCGCCTATGGGATACTGACCTGCGCCGGACCGGAATTGAAAACCTTGAAGGAAACCTTACGCCGATGGATAGGTTGAACCGCCCGGTACCGAATGCTAACTTTTCGGCAAGCCGATTTTTCTGCAACCCCCTTTGTAAACCATTGACTTTGGAGGTGTTTTAGACACGAGCC # Right flank : TTTTGTCGGTTCCGGGACCGGGAAGCTCGGCATGAACGGCTAGGTTCGCGACAGATGCGCTTCCCTTCGGTCAGCACATCCTACAAACGGATGGGCCGGGCGAAGGGTTGTCGAGCTGCGGAGGGTCCTTCGCCCTTTTGGTGGATTGCGGAAACCGGGATGTCGTAGGGTGGGTTAGGCGCATTCCGGCGCCGGCTGGCCATCGATCGCCGCGCTTCACATGCGCCGTAACCCACCAACGCTCGGCAACCTTGCCGCTCGCTTCGGCGGGTTGCATGCCTTGAGCGGAAGCGCGCCTAATTCACCCAGCACGGATATATGGGCTTCTAACGGGTTGCGCTGGTCACCTCGCCTGCCGCAAACGATCGTTTTAACCTAAAAACGGCAGTTAGACCGTACAAAATCCCGTTCACCCTTCTATACATCAGAACGTAGATACCGTCTTAGAAATCACGATGCAAGCCCATGATTGGGATCGAACGGTCGGCCGGACTTAAGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 5993-5328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIBZ010000003.1 Methylocaldum sp. RMAD-M Ga0454163_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 5992 36 100.0 33 .................................... ACTAGAGTGGCGTTCATTGCCTTCAGGTTTTCG 5923 36 100.0 34 .................................... GGCGTCATGTCCAGCAACCCAAGAGTCATCCGGT 5853 36 100.0 33 .................................... TGTCCCGCCAGCCGTCCGAGGCGTTCAGGAAGG 5784 36 100.0 34 .................................... TGTCTAGCTAAACCTGACCGCCACTACACAGTAT 5714 36 100.0 34 .................................... AGGCCAAGAATCACGGATTCCGGTTTGTTTGCCG 5644 36 100.0 36 .................................... GTGTCCCTAAAAATGTCCCTAAAAAATGCGGGTGAC 5572 36 100.0 35 .................................... GGGTGATGCAGGTTGCGGTACGCAATCGCATCCGT 5501 36 100.0 34 .................................... GACAGCTTGACGCTGTCCCGGTCGAAGAAAGTAG 5431 36 100.0 31 .................................... ACATAGCAGCCAGCAATTTGTTAGCTAAAGT 5364 36 91.7 0 ................................T.CA | A [5332] ========== ====== ====== ====== ==================================== ==================================== ================== 10 36 99.2 34 GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Left flank : AGTCCGGCCACCGACAAACGTTCCCGGCTCCAAGGCGAGATTTTGAACCTGCTGAGGCAACATCTTCCCCACGGACGGGTATTGTCCGAGTGCAGCGTACAAACCTCCGAGGGCGTAAAAGTGGCCGACGCGGTTTGGGCCAGCGCGGAGTTTTTCGCCCACCGCGGTTTGGCCAATCCTTCCCCGGAAGCCCCTGAAATCGTGGTCGAAGTGCTTTCGCCGTCAAACGGCCGGGCCGAAATGGAGGAAAAGAAGGAACTTTATTTAGCCCGTGGCGTGCGCGAATTCTGGGTGTGCCGGGAAGACGGCGAAATGCTGTTCTACAACAACCACGCCCGGCTCGAACACAGCACCCTGGCGCCCGAATTTCCGACCCGTGTCGAGTTGCCCGCATGACGCTCCGAAAATCGCCATCACTCGACGCTAACTTTTCGGTAAGCCGATTTTTCTGCAAACCCCTTTGTAAACCGTTGACTATGGAGGTGTTTTAGACACGAGCC # Right flank : AACGATGAAAACCACGATTAAAAGAGCAATCATAAGCTCTTTCCAATAACCATTCTTTTTAACCATGACAACTTACTTCGTTACCCGCCATGCGGGCGCCATCGAATGGGCGCGCGAAAGCGGCATCGCGGTGGATCGACAATTGGCGCACATGGACATGGCCGTGGTGAAAGCCGGGGATCGGGTCATCGGCACCCTGCCCGTCCATTTGGCCGCGGAGGTATGTGCCCGAGGCGCCCGCTATCTTCATCTGGCGCTCGAAATACCCCCGGATTGGCGGGGACGCGAGTTGTCGGCTCAGGATCTTAGGCGTTTCGGCGCCCGCATCGTGGAATACCGCGTCATCGCGGCTGAAGGCGAAAACCCATGAGCGCACGTGTCCTGGTCATCCCGCGAGCCGAGTGTCCATCTTTACCGGAGGCTGATGCCTGGGCGCGAACCACCTGGACGTGGCCCCGGAACTGGTCATGGCGGCGTCGCTCCGAGGCCGAGGGCGACGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTTATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //