Array 1 5391-6699 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQH01000032.1 Salmonella enterica subsp. enterica strain NY_FSL S10-1823 NODE_32_length_35910_cov_58.5719_ID_4809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5391 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 5452 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 5513 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 5574 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 5635 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 5696 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 5757 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 5818 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 5879 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 5940 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 6001 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 6062 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 6123 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 6184 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 6245 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 6306 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 6367 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 6428 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 6489 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 6550 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 6611 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 6672 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23406-24594 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQH01000032.1 Salmonella enterica subsp. enterica strain NY_FSL S10-1823 NODE_32_length_35910_cov_58.5719_ID_4809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23406 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 23467 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 23528 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 23589 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 23650 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 23711 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 23772 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 23833 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 23894 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 23955 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 24016 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 24077 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 24138 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 24199 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 24260 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 24321 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 24382 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 24443 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 24504 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24565 29 93.1 0 A...........T................ | A [24591] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //