Array 1 201759-203678 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNN01000001.1 Cronobacter dublinensis strain cro3540W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201759 29 100.0 32 ............................. CGGGCAAACGACTAACGAGGGAATTAATTGCT 201820 29 100.0 32 ............................. TAGAATCGCCAGTCACCCATACCCTCACTTGG 201881 29 100.0 32 ............................. TGTGACCGGTGTTTCGCGCGCGTGGGTGTACC 201942 29 100.0 32 ............................. CCCATACAGCCTACTGCGCCGGCGGGCAGAGA 202003 29 100.0 32 ............................. AGCGGGCGCTTATCCACACACTGATAAGGCGC 202064 29 100.0 32 ............................. ATCTCGCCATCGATGGCCCGACGAAACATTTC 202125 29 100.0 32 ............................. GCGCGCCGTTACGAGATATACGGCGCGCTTCA 202186 29 100.0 32 ............................. AAACGCTGCTGCCGCGGTCAGATAGTCAATAT 202247 29 100.0 32 ............................. CGCAATCGATAGTCACCGGCGCGTTAAAGTGC 202308 29 100.0 32 ............................. AAATCGTTGCTGCTGACGCGCTCAACTTTAAC 202369 29 100.0 32 ............................. GAATCCCAATCAAGGAATTCATGGTCAGCAAC 202430 29 100.0 32 ............................. AGGGTGGAGTTGTTCATTTTGCGTTCCTTACA 202491 29 100.0 32 ............................. CTCCGATCGTCTTCAGTAGCAATGGACACGCA 202552 29 100.0 32 ............................. TGATCGAAATGCTCGAGGGCATCGTTCCGAAC 202613 29 100.0 32 ............................. CTTGCTGCTGCTTACGGAGTGTCTATTGCGTG 202674 29 100.0 32 ............................. CTATCTGGGAGGCGTGGCTATCAATGACTCAA 202735 29 100.0 32 ............................. ATTAATGAGCTGGTGAGCAACACAGGTTCAGC 202796 29 100.0 32 ............................. GCCCGCGCCTTGCGCCCGCCCAGCACAATGTG 202857 29 100.0 32 ............................. GATCTCGCGGTAGTCGATTTCCGCACCGTCAG 202918 29 100.0 32 ............................. CGACCTGAGCCTCCACCAAAACCAGACGAAGA 202979 29 100.0 32 ............................. TCAGTTGCGAGGCTCATTTTATCCTCTACCCG 203040 29 100.0 32 ............................. GTGCGCCGCTACAACCGCACTACCCACCCTGA 203101 29 100.0 32 ............................. GACTGATAGAGATGACCGTAACGATAAGGGCG 203162 29 100.0 32 ............................. CAGGCAAATAACAAAAAACCCCGCCGGAGCGG 203223 29 100.0 32 ............................. CGCCCTGCTTCATTACGTGCCGGATCTGCACC 203284 29 100.0 32 ............................. CAGGCGCCGCCGAGGCGTATCACAACGTCCGC 203345 29 100.0 32 ............................. TTCTTAAACAGATACGGCCAGACCAGCACGCG 203406 29 100.0 32 ............................. GAATTTATTCTGTTATAACGGGGGTGTGGCCG 203467 29 100.0 32 ............................. TTTACAACGGTTGTAAAAACGCAAAAAAATCA 203528 29 96.6 32 .................A........... GGGCGGACCTCGACCAGCTCGGCGCCAATTTT 203589 29 100.0 32 ............................. CAGTTTGGGCATATTCGCCGCAACGTTATCCA 203650 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTCGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGTGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGAGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGCTCAAATAAAACAACAGGTTGTTTTTAGA # Right flank : GAACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCTCGAATATCCAGCTTAACCACCCGGCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCCAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGTTTTAAGCCGGAGGATGTACGACACATTGTACTGACGCATCTGGATTTCGATCATGCGGGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229925-231786 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNN01000001.1 Cronobacter dublinensis strain cro3540W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229925 29 100.0 32 ............................. ATTTTTTTCCTCGATTGATTGATCAGGTGCGG 229986 29 100.0 32 ............................. GGTCGCCGGCGTAAGCCCGCAATCGGTTAACG 230047 29 100.0 32 ............................. CGGGGTGTTGTCGTTCTCCAGCGCCTGCACCC 230108 29 100.0 32 ............................. CTCCAGATAGAGGCCGAGGAACCAGTAAATAA 230169 29 100.0 32 ............................. GGGATCTGGTGGGTTCGGGTTAACGTATTTTG 230230 29 100.0 32 ............................. GCTTTTGAAGGTCAGGCAGGCGTTGCTGAATT 230291 29 100.0 32 ............................. GCAGGAGCTAAAAATGGGCGCGTTGTTGATTA 230352 29 100.0 33 ............................. GAGGGGTAGGCAGGCGGGCAAAGAAAACCCCGC 230414 29 100.0 32 ............................. CAGTTAAAGACCTGAGTGCGGCGTGCAAGATC 230475 29 100.0 32 ............................. TGTGGTCGCTGTCACGTTATTTGCGCCGTAAA 230536 29 100.0 32 ............................. GCGTTAAACGCAGCGTTAACATTGCGCACTAA 230597 29 100.0 32 ............................. CACTTTTATAAAATTGTCGGTAATGAACTTAG 230658 29 100.0 32 ............................. CACGTGCATTTCGCGTGCATTTTTTTGTCTTA 230719 29 100.0 32 ............................. CGCAGAAGGTGCAGCAGTATCAACAGCAGCAG 230780 29 100.0 32 ............................. TGGGGGACGCGTTTACCATTGCAGGTGTTTAC 230841 29 100.0 32 ............................. AATCCTATTGTTCTTGGTATCCTGGCCGCTGC 230902 29 100.0 32 ............................. CCTTCGCACAGCCACGCCGTATCCGTACCGGT 230963 29 100.0 32 ............................. CGCACCTACCTGTGTTGCGTACACAGCATCAG 231024 29 100.0 32 ............................. TAAAATTTTGTTTCCTGATTATACGCCATTGC 231085 29 100.0 32 ............................. AGCCCGCTCTTGAGCGGGGCGAGTGAGTGTTA 231146 29 96.6 32 ............................T GGCCCAGCGCGTTTTCGGCAAAAGATGTCGCC 231207 29 100.0 32 ............................. GATAATGTAAACGGAGCTATTGAGCTGGCTAA 231268 29 100.0 33 ............................. GAACTCGGCGCCGAAACCCCCGGACGATCCGCC 231330 29 100.0 32 ............................. CGCTGCGCGAGCGCGTGCCCGATTTCGGCGGG 231391 29 100.0 32 ............................. AGGTTTGCGAGGACGATCTTTAGAGTTAGCGG 231452 29 100.0 32 ............................. TCTCAATCATTTATACGTCTGTCAGAAGTTCA 231513 29 100.0 32 ............................. GTCTGAACATCCAGGTCGGTTATCTCGATTTC 231574 29 100.0 32 ............................. GCGAGCGAAGAAGACCCCGCCCGTCCGCTGAA 231635 29 100.0 33 ............................. GGAATCGCACGCCGTGCGAATTGCCGAGGCGCA 231697 29 100.0 32 ............................. CAATGAGACTGACCCTGAACGACGTCAAAGAA 231758 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAAAATGTGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGATGTGAAATATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGGGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAGAAAAACCTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTAGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGACAATCTGCTTAACAGTAAAGAAATCGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGACACGCGAGAAATAACGACGATGAATTTTATGATGCCGACTTTTTTATAAAAGCGCAGGACATTATGCCTGACTGGCCAACCCATACGGTAGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACATCTCATTCGGCCAGCATCAGACGCATGGCGTGGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //