Array 1 98595-98989 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG428546.1 Xenorhabdus bovienii str. Intermedium, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98595 29 100.0 32 ............................. ATTTTATTCTTTTTTCAATATTTTTAAAATAG 98656 29 100.0 32 ............................. AGCTCAAACGCCAAGCCGCAGAACAAGCACGA 98717 29 100.0 32 ............................. GCATCTGATGAAGAGGAAGACGTGCCTGAATG 98778 29 100.0 32 ............................. CATGCTCACCGATCCTGAAGGGTTGTTTTTGC 98839 29 100.0 32 ............................. GCAACCAATGCCATTGCGCGGGAACGTTGTAA 98900 29 100.0 32 ............................. AAAACTTGAAAGAGAATCTCGATCATTTAAAT 98961 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : TACCCAGTGGCTCGGCAAGAGCGGTAAATCGAGGCAGTTCATACTTGATTTGCGGTCCCAGTAAAATCACATCGGCTTCATTGATATACATTTCCAACTCCAATGCGGGCACTGCTTTAATGGCGACTTCCAGCCCTCTTCTTTCCGCTTCCGCCTGCATACGCTGCACCAACATGCTGGTAGACATCCCCGCCGCACAACACAATAGAATGGTTTTCATGATTTTGTTCTCTTTATTATTGTCCCATTATGATTTCGTCTAATTCGAAGATGAGAGCGCTCTCATTTTGGTTAAGGCTAACAGGTTATTTTTCCGTTGCTGCGATGAGGTTCGCATAATAGATAAGCAATAGCTTAGAAAATGGACAAAATGCGATCAGCGTTGCAGATGATCGGTAAGGCAAAAAATACGGCAGGAATTTGGCTGATTTAGGTGGTTAAAAAATGGTAGAATTTTGAAGGTCAAAAAACATTTTATAAAACAGATAGATGAAATTAGA # Right flank : GGGTTCATATACAGGTCTTAAGCACCAATGGCTTATTTTAGATACAAAAAAACTTCATTTATGATTTGATAATCGTCGCCAAACAAATCACCAAAATCACGGATGAAGCCGATGATTGCTGTAAAACACCAATTAATACAATTCATTGATGAGGATTCTTTGCAAAAGATTAAGTTAAAAAAACAATTAATAACCTGTTATAAATATCTTATGGAATTTGAATAGCACCTCGTATGGCTCGCACTTCTATATTTTTTGACTTTTAATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTAATATATTCTTAACTAAATTTATTAAAATTAATAAATACAACAGCATATTAACAATCTATTTTAACTAAAAATAATTTCTTGTTAATATTATATAATGCACAAAGTGTTTGGTGTATAAGTATAAAATACACTTTAACACCTCGAATACAAATGGCACAAAAAAGAAACTTATATAAAAAAGAATAAAAAACTGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29337-29125 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG428583.1 Xenorhabdus bovienii str. Intermedium, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29336 29 100.0 32 ............................. ACGTTTGTTTATTTGCATGATTTATCTGGTGA 29275 29 100.0 32 ............................. TGTTTGTGATGCCAACTGCTGCCAGTTATCTG 29214 29 100.0 32 ............................. AATGCGTCATATGATTTTTATGCAAATCAATA 29153 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCTCCGTACATACGGAGATTACCCG # Left flank : ATTAAAATAAATCTCATTGAGAGATGAGGTTAATGTTATATTTGCATATTATTTTATATAAATTATTATTGTAAATAGATGGTTGGTCATGTTTCTATTTTTATATTAAATTTATTTCTTTAATAATAAATAATATTATTTATATTAATATATGTATAATCGATGTTATCTATAATGAATAAAGTTATTTTTTAAAGTTATCCATATTTTAATAATATTAATCTATGTTTTATTTTTAATTAATATTTAAATTATACTTATTATACTTATTATACTTATTATACTTATTATACTTATTATACTTATTATATATTTATATATTTATATATTTATATATTTATATGAAAGAGTGTTTTTTCGATTAAATATGAGTGTTGACAAAATTGTGGGCGATTTTTGCTGGTTTTTAGGCTATGTTTAATAACTAGTTTAGCCCTTTAAAAGTTGGTAGAGTTTTAGGCTCTTAAAAAGAGCTTTTAAAACAAATAGATGCTTTTAGA # Right flank : CAACAAAATTTATGATTATCTCTTGATTCTCATCCCTTATTCACTGGATAATCATTCGCCTCAAATTCTCTCTCCATTTTTTACCTGAAAAGCCAAACGATTGCGTATAGAAGTGGCTGCACTCATGAGTACAGCACCGATTTTAAGTATCTTACGACGTAATCGTTTTCGTTAGGCAGAGTGGAGAGACGATAGCGTTAGAAATTCAACATAATGGCAGGGGAAAGACATGTCTGGCATGCAGGCACCAACTCAATGCAAACTCGATAAGTATTTTAAGATTACTGAACGCGGAACGACGGTACGTCAGGAAATTTTGGCTGGATTGACGACATTTCTGGCGATGGTCTATTCCGTTATCGTTGTGCCGGGCATGCTGGGGCAAGCCGGATTTCCTCATACAGCGGTCTTTATTTCTGTATGTTTGGTGACGGGTATTGGCTCATTATTGATGGGATTGTGGGTTAACCTGCCGATGGCGATTGGCTGTGCAATCTCGC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCGTACATACGGAGATTACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //