Array 1 71-494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000100.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 71 30 100.0 35 .............................. ACCTTCTGAACGCTTGCAGCCTAAGGGACTTTTTA 136 30 100.0 36 .............................. AGGAACCAGTAGTTTATGTGCCCGTCTTTGAACGAG 202 30 100.0 36 .............................. AAAGAACATTATCGCTTCTTCAGGAGTTGTGGCGAA 268 30 100.0 36 .............................. AAACCATGCTGCAACTTTCGAGAAAAGGGAAACCCG 334 30 100.0 36 .............................. TTAAAGCAATTACAAGAAGAGCAAAAAGAGGGGTTG 400 30 100.0 35 .............................. TTCTTCTGTGCGAATAGTTTCGTAGATGAGAATAT 465 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ATTTAGTCTAGCATCATATAATGACATTGTATCAATTTTCCAAATGCTGATTTCATCATTATTTTTGGGGG # Right flank : CTGATCGCTTCTTTTATAAATATCTGTTCGTCAATATATGAGAATTCGCGTCGCTTGCTTGTTTTTCCACATTTTTATGAGCGTAATGTTCCTCCTATAGGTGAAGCTACGAAATTCATTAAACGAGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13402-17884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000001.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 13402 29 100.0 39 ............................. TTAACTTATCATATCGTGCATTAGCTTTTGCGTCTCTTC 13470 29 100.0 38 ............................. TTTGGACTTGCGGTAGTGGAAATTTTGCCGGAAAGCAT 13537 29 100.0 35 ............................. CTTTGTGTCATACTGACGAGATAAGCTGCTTCCGC 13601 29 100.0 38 ............................. ATCGGAATCGGCCGCGGCCAAAGCAGTACGATCATGAC 13668 29 100.0 36 ............................. TATTTTTATTTGTTTTCGCTTCTTCTTTTGTGTATC 13733 29 100.0 38 ............................. GCGAATGTGCGTGTCTCGTTCTATCGCTCTTGGATTGC 13800 29 100.0 39 ............................. ACGATTCGCCTCAGCCTCAGGCGTCTTGGTCGGTGTCGT 13868 29 100.0 36 ............................. ATAAGAACGACAGAAATAAAAGTAGATGGAAAACGT 13933 29 100.0 38 ............................. GAAACAAAAAGAAGTGCTAGACAAACATGGGTTATCGT 14000 29 100.0 35 ............................. TCGCAATAGATCGCTATATGATCGTATCGATATTG 14064 29 100.0 35 ............................. CATGGTGGCTTTTCTGATGCACTTTCTGTGCTCGG 14128 29 100.0 38 ............................. TGGGATTTCTATTCGCTGATTTCGTTTCTGGATGTTCC 14195 29 100.0 38 ............................. GAAAATGTCAATATCGGCTGGATTACGTGGTTCATTCC 14262 29 100.0 34 ............................. CATGCCAAAAATCTTATGAGTGTCGAAAAGCTGA 14325 29 100.0 37 ............................. ATCCTTTTAGAATGTGGAATCAGATTCAAAGACATAC 14391 29 100.0 37 ............................. ACGGAAGAACCGAGGACACTAAATGAGCGGGATAAGC 14457 29 100.0 38 ............................. TTAGAAGAACAACAATCAACTTTATCAATCTAATAATC 14524 29 100.0 35 ............................. TAACCATCTGTTCATCTATCAAACCAAATATCATT 14588 29 100.0 38 ............................. ATCAACGCAACAAATATGAGAAATGCTAGGATTCTCGC 14655 29 100.0 34 ............................. TAGAACACGCGGAAGCCCTATAATTGCATTCCGC 14718 29 100.0 37 ............................. TTGAAAAGTTTTGGAATGTTTGTGTTAAACACTACAA 14784 29 100.0 36 ............................. AAATTGTATCGTTAGGATTAACTGAGAAAACAGCAG 14849 29 100.0 37 ............................. TAAAATTACATTTTCATTCGCTTAACTTTTCAAAAAT 14915 29 100.0 35 ............................. TTGTGAAATCGTCTTTTTTCAATGCGTGATTTTTC 14979 29 100.0 37 ............................. AACTTCGTCATTGTTGCTGTTCACTCCCGACATTTCC 15045 29 100.0 37 ............................. TAGTGTCATGACAATGTACAGACATTTAAGCAGATTT 15111 29 100.0 36 ............................. AGGGTAAAAAGAAAATCAAGCGTCATCGAAATCACA 15176 29 100.0 35 ............................. ATACAGTTTAATGACAAGGAAAGCATGGATGTACA 15240 29 100.0 36 ............................. TGGATTATTCCAGCCGAACTTCTCGACGTGGAACAA 15305 29 100.0 37 ............................. CCGTTCATATTTCACACACCGAGGAAAAAGGCATACA 15371 29 100.0 36 ............................. TACGCACCTAGGATAAAGCCCCGATCATATTTACGG 15436 29 100.0 36 ............................. AAACAAGCTGAAAGGTGGTGGTGACAATGGAAAGAA 15501 29 100.0 39 ............................. TGTTTCTTTATACGTCAATTCTTCAAATTCATCATACGT 15569 29 100.0 38 ............................. TTGACTTGGAATCCTGATTCAGGGGTTTGGGAGCGCCC 15636 29 100.0 38 ............................. TGAAACTGATGCGAGCCATCCGGCATTTTTTTCATCGC 15703 29 100.0 36 ............................. TGAAAAATACTTGCTCTACCATACTCAACAGCCCCT 15768 29 100.0 37 ............................. TCAAAGGCAAGAGCAGTGTCTGTATCCATACTTTCCA 15834 29 100.0 38 ............................. CCGTTCTCTGAATTTACGAGAATCGAAGTTGGAAAATA 15901 29 100.0 35 ............................. CATACATCACCCCCAATGTAAAATTCATAAGGCAA 15965 29 100.0 35 ............................. TCGAGAAGGAAAGACATATACAGGTCTTTGCCTTC 16029 29 100.0 35 ............................. ACCTAAAATTTTGCGAAGAAAATGCACGATGAAGC 16093 29 100.0 38 ............................. TGAAACAGTGATCGAGCCGGAACGTTCGCAACGTACAG 16160 29 100.0 37 ............................. GAAGAAGATGAAGCGACGCCGGCCGACAAGGAGGAAT 16226 29 100.0 36 ............................. CATTTTGAAGATTTTCTGTTTGATTGGAATCATAAG 16291 29 100.0 37 ............................. AAGGGGGAAAAGTGAAAAGGTACTATTAGCTATATAA 16357 29 100.0 35 ............................. TACATGGAGATTAACGTAGAAATTGACGGTGTAAC 16421 29 100.0 35 ............................. GTGTATGTTAAGCCGTTGACGGAGCAAACGAAAGA 16485 29 100.0 36 ............................. GAGTATATCAATGACGGATTTTTCACAGACCTCAAG 16550 29 100.0 35 ............................. AATAACTCAACAACGTCAAGACACGTTGCTGATCA 16614 29 100.0 37 ............................. CAGGTTTCTTTCCTTTTCTTCCCTTAACACCTTCATT 16680 29 100.0 38 ............................. GGGGCAGTTGCGAACGGATTACAAGAGAAAGTTTTGAC 16747 29 100.0 37 ............................. GCGGACGCAATCGACGGGCTCAACAAACGGAGATACT 16813 29 100.0 38 ............................. GAAGGATTAGGGAAGGAGGCGCAAGGAACCTATCTCAT 16880 29 100.0 36 ............................. CTGTTCATGAATAGAGAGGCCGTTTTTGTACATGAG 16945 29 100.0 37 ............................. AAAATCATTTCTTTCGATAGCTCGCGCGATACGACGC 17011 29 100.0 37 ............................. CGACTTGCTGAATTCGTGGTTTGCAAACGCTTCCTTC 17077 29 100.0 38 ............................. CTCGACAGAAAGTGGAGTAACGCTATAACCCGCCGCTT 17144 29 100.0 36 ............................. GCATTGATATGCACGCTGACAAATACGTCCGCGCCC 17209 29 100.0 33 ............................. CGAAAAATACACTTTGCTATCGTGATGCACGCG 17271 29 100.0 37 ............................. GTGCACTACGAGGATGAAAACGGCAATCTACACAACA 17337 29 100.0 36 ............................. CGGATTCCCGCATATGACGCATGTGTTTCCGAACAT 17402 29 100.0 36 ............................. TGTTTAGGTTTGCTCATTTATATACCTCCTATCGGA 17467 29 100.0 35 ............................. TTGCTTGATTCTTCGATTGTTCCGGATCGATATCC 17531 29 100.0 35 ............................. ACAAAAACGTCTTTTGCGTCTTTGTCGAGGTATAC 17595 29 100.0 36 ............................. TAAAATTCGCGAATGATATTTTTGAGTTGAGACTTT 17660 29 100.0 38 ............................. ACGAGAGCGAGATAAAGCCGTATTTGAGCAAGTAACAG 17727 29 100.0 37 ............................. TTAGCGAAAACAGACCGGAATTAAAAGGTGTGTATCA 17793 29 100.0 35 ............................. TAACGACGCTGAATACGGTCAATAGATCGCCGCAA 17857 28 82.8 0 ..................-......TTTA | ========== ====== ====== ====== ============================= ======================================= ================== 69 29 99.8 37 GTTTTATCTGAACTTAGTGGGATATAAAG # Left flank : ACGAGCCATATAAACCGTTAAAAGCGTGGTGGTAAAATGTTTGTGATTATTACGTATGATGTGGGGGAGAAAAGGGTAAACAAAGTATGCAAAAAACTTAGGGAATACTTAACATGGACGCAAAATTCCGTATTTGAAGGCGAAATTTCTAAAAGCTTACTTTTGAAATGTTTAAACGAAATTGATCAAATAATTGATGAAGATGAGGATTCAATTTATATTTATGAAGTGGCCAATCCGAGAAATGTGAAGAAGAAAGTATTCGGACAGGAAAAAAACTTTGAAGAGCTCTTTTTATAGTGCGCTTTTGCCAACTTGCCGTAAACCGCTGTTTTTGAAAAGTGTGTGGAAATGCTTGATAAATCAATAAAAAGGCGCTATTTTTGATGTGAATGCCCAACATAACTACCACCTTACTGCAAAAAACAGATATCGTATGTGTATCAACCCTAGCGATAAATGTTGATACATCAATGGATTGCTTCTTCTATAAAACAGGG # Right flank : ACTATTAATTTCTAAAAATGAGAGGAGCATTTTTAGAAGAAGGGATAACTTAAGATTTTCATCTTTCCTTCCTAAGACGATGTTACTGTTTTTGACAAATCCTTTTTGTTTAGGTTTCATTTTAAATCGTTTGTATGATCTGGGATTTTTTAAGTTTCTCATCAGTATGATCATATTCTTTTTTTGTAAAAAAACCTATAGATAGACAGTTCTAAGAACATCACACACCAATGATCTTTTATTGTCTATCTATAGGGAAGATGAACATACTAAAATATTTCTCTATCTCCGCTTCTCTTTTTCATTTCGATAAAATTCGTGGAACATTTTCATTAATGCTCGCTTTTCGATGCGGGAGACGTAGCTTCTGGAAATGCCGAGCTCCTTGGCGATTTCGCGCTGGGTTTTTTCCTTTTGCAAATCCAGTCCAAAACGGCTGATAATCACTTCTTTTTCCCGTTCATCCAGCACATCAATGTATTTTTTGACTTGCTCGATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 77117-79209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000015.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 77117 30 100.0 38 .............................. ATAAAAATCAATACCATGCTACCGAAATTGTATCCAGT 77185 30 100.0 38 .............................. AATGAACTCCACGTGTCTGATATATATTTTTCGCTTTC 77253 30 100.0 36 .............................. ACGCTCATATAACAGACGGATCGTTGCTCCTCATCC 77319 30 100.0 37 .............................. TACAAGTCATGTTAATACCTTCGGATGGCCGAAGGTA 77386 30 100.0 37 .............................. TTGAAAAGAAAGATGGTGATTGGTGTGCTGTGTTAGC 77453 30 100.0 35 .............................. AATTCAGCGTAGTATCCATTAGCTCCAATCGAACC 77518 30 100.0 37 .............................. TCAACGTCGGCCGGCTCTCGCCAAACGTCGCCTCGAT 77585 30 100.0 36 .............................. TGGAGAACCATTAAGCGAGGAAGCGAAAGAATCTCT 77651 30 100.0 35 .............................. TGCTCATATAAGCAAAAAAATTGAAAAAGACACCA 77716 30 100.0 36 .............................. CAAGATTTACTAGGAGGTGTTTTTGTGTCCAAGATG 77782 30 100.0 37 .............................. GCCCGCAACCCTTCAAGACTATTTTCGAATCCTTTTA 77849 30 100.0 37 .............................. AAGGAACTGTCCAGCCACCAAAGAAAAAGCCAACAAT 77916 30 100.0 37 .............................. CGTTTAGCCGATCCGCCAAAAGCAGCGGCAAACACAC 77983 30 100.0 37 .............................. ATAAAGTGACAAAACACTATTTGTACAAACTTTTGAA 78050 30 100.0 35 .............................. TCTTTTGTAACGCGCATTCCAAACGATACGCCATC 78115 30 100.0 38 .............................. ACATTTCCAATAACTTTCCCTGCTTTTTTCCCTCCAGC 78183 30 100.0 38 .............................. TGGCAAAAAGCGCTGGTTGCTGCAACATTCGGATTCGT 78251 30 100.0 36 .............................. AAACTACTCTATGTAACAATATCCTAGATCATCGGC 78317 30 100.0 37 .............................. CGGATCACAATTCACCGTTAATCACATTGAAGAAGGA 78384 30 100.0 37 .............................. TCGGAAGCCTGGTGGGAAACGGAGCGAATGGATTATT 78451 30 100.0 39 .............................. TGGACAGGCAATCTCTATATAGTGCAGCAGGGATCTTCC 78520 30 100.0 35 .............................. TTATGTGCGAGCGGGAGTTGTTCCTATCGAGATGC 78585 30 100.0 36 .............................. AACGCTATGTTGACGAGCTGTTCACGCGCACCAAAC 78651 30 100.0 35 .............................. TCAAACAATTCAAGCTTAAAATAATACTCATACAT 78716 30 100.0 39 .............................. CCTTTCTGCTCATTCTTCTCCCTCCTGTACTTTTTCAAC 78785 30 100.0 35 .............................. TCATTCGCGAAAATAAGCAATTGAAGCGTGATATG 78850 30 100.0 37 .............................. GACCAAGTGATCAGAGTCCTGCGAGATTCTACGAAAA 78917 30 100.0 36 .............................. AGACTAAAGGGGTTTCCTTCAACGTAGTTGATCCAT 78983 30 100.0 36 .............................. CCTTTCTGCTCATTCTTCTCCCTCCTGTACTTTTTC 79049 30 100.0 36 .............................. ACTCATAGTCATTTAAAATAGAGCTGTCATATCCCT 79115 30 100.0 35 .............................. TCACGAGATCCGATAACGTTCCTGGTTCAAAATAT 79180 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 32 30 100.0 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : ACTTATGAAAACCGATATGGCGATAAGCGAACCCATTTTTTTTCGCCGCTTGATCTTGTTTTTTCAGATATGATAGAGAAAAATTTTTGCAATAAGTTTCAAGCCTATTTTCAAGCGCAGCCAACGGAGAGAGTCAAGATTAAGCCGATCAAAGTAACAGAAAAAGATAAAGTGATTACAGCGTTTAAAGATTTCCGTATCAATGCATGGAATGGAACTTATGAAATTCAGGCCCCGCTTGCTTATTTGAAATTTATGTATGATGTTGGGGTCGGTTCCAAAAACTCGCAGGGATTTGGAATGTTTGAGATCATAGAGTAGTTGTATTTCTTTGTCGTCGACCTCTAGTAGCGTACGAATCCCGGGGGATCGACGACAATTTTCTATTTGCCAAAATTCCTATAGTGATAAGAGAAATAAAATATTGATAGAATCTTTAGATAAGTTTATAATAACGTTGTATTGATTTTCCAAATGTTGATTTAACAATATTTTTTAGG # Right flank : CTCCATCTTCAGGAAAATGTTTAATATTCGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 58-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000014.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58 30 100.0 37 .............................. ATGGATGGAAAGACAGAACTTTTTCGGGGTGTTATTT 125 30 100.0 35 .............................. CTCTTTGGGCGTTTCGTGTATTTTGATTGGTATAG 190 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : GTTTATTGTCGCATTCTCGATTCTCGGTGTCCACTATTTAGTCTAGCATCATTTCTAG # Right flank : CCCTAGCAGGGATAATATAGAAGGAACGATCTTTTTTGATAGTGTGGGGAAAATAGAAGAATCTCTGATTTCCTTAAAGCTTAGCTGTCGTTATTTCGTGGTAATCGGTTTACGCTTGCCGACCGATTTGCTCATTTTAATACATCCATCGAGGAGTCTCCCGCCTCTAAGCGAAGTGGAGGTGGGAGAGGTCATCAGACCGCTTGCTGTTCGATTCTTTGCTGTGTGCTTTTGTGACAGAGACAAGTCTGTCACCCTCTTCCGATCTTCGGTGTTCTAGGCGGCTTCATTGTATGGATGGCTCCGCCGCCCTTATTTTGTCATCGTCTGCCGTTTTTCCGCTCCTGCTTTATGCGAATCTGGAAAGGAGCGGATCTTTTCTGTTTTTTAGAAAATTTCCCGTTGCGCTTTCGACTTTCACATGTTCTAATAGGAATGATAGTAAAGCGAATGATTGGTTCGCCGATTTTGCATACAATGGAGGGCTGGAAGTTGAAAGA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 34667-35695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000014.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 34667 30 100.0 36 .............................. CTTTGGGGTTACAAACAGCAGCGATAGCAAGACGTT 34733 30 100.0 39 .............................. AAGACATGTTTAGATACTCAGCCACCTCCTTTTGAGTTA 34802 30 100.0 36 .............................. TGAAGTCCTCAAGTTCTTTTTTAGAGGCAAACTGAT 34868 30 100.0 35 .............................. TGTACAAAAATAGACCTGGCTATGACTCTACGAAA 34933 30 100.0 37 .............................. CATCGACCTGCTGCTCCAACGGTATGGCCTCACCAAT 35000 30 100.0 35 .............................. ATTGTTCGGCCGCTCGCTCATCAGGTGAGATTCCA 35065 30 100.0 37 .............................. TGATTTTGGTGTTTATGCTATGTTGAGATATGCTCAT 35132 30 100.0 37 .............................. CGCTTTATTTTTATTGGCCGTGGTGGTGTGATTTTTA 35199 30 100.0 37 .............................. TTTCTCAAGTTGCGTAATCGCTATCGCTGTCTTCACC 35266 30 100.0 37 .............................. TAGAGGAGGAAATTAAAAACGCCAAACCTACTATCAT 35333 30 100.0 37 .............................. CGACGTTTGCAATGAAACTCTCGACATTGACATATAT 35400 30 100.0 36 .............................. AACCGTCATTTCTGCACTTAGGTTGCGCTTACCTCT 35466 30 100.0 36 .............................. GAATGGGTGGGGGTTGAAACGGTCAAGGTGTTTTCG 35532 30 100.0 39 .............................. ATAGAAGGTAAATTTCCTTTTTCGATTTTACTGATGTAA 35601 30 100.0 35 .............................. AAATCTAGATCATACAGGAAAACCGCCTTTGCCGC 35666 30 83.3 0 ................CA...A..AA.... | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 99.0 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : GATTGTCGTTCTCATATTGGATATAAAGAATTTTGCAACTTCTTGAGGGCGTTTCCTATCGTATCATGAATCTTTCATGGCTATAAATTATTATAAGTGAACAAGTAGATAGATGCAATGTGACATGTTAATTTTGACATAGATCGAGCGTTTGGACTTTTTCTACGGTCGGGCAGATCCATAGCGCCGCTTTATGGAACAGTGGGCGGAGCTGAGGATGACGTTATTTCCATCTTCGTTGACGAAAAGGCAAGCCCGAATCTAACAAGCTTCGGCAAACTCACAAATCCTCATTTGTTTTCCTAAAAATGACGTATGAACGAAAGAAAAACTGTCGTCGACCTCCAGTAGCGTCAAAAACCCGGGGGATCGACGACAATTTTCTAACCGCCAGAATTCCTACAGCGATCAGAAAAAGAAGCTATTGCTCGAACTTTGAGATACGTTTATAATGACATTGTATCCATTTTCCAAATGCTGCTTTTATCATTATTTTTGGG # Right flank : CATTTTGCACGCACAGTGTTTTTACTGCCATCGACGGCGCGTCAATTATAGGGCTGTGGTGATTGAAATGGCTTTAAGAAAACACATCAGGAAACTTAAGATCAAATTTTATGTTATGCGGTAGATATATGGGGTCTTCCCTCATTACATTTACGTGATGGGGGATAGACCCCATTATTTGTTTATTATCATATAAGCCTCAAGTCTTATTCGAATATACATTTGAGGTCCATTTTGGAACATTCCCTTTTACTGTATTCTTACAATAAGAAAAGGAAGAGTCGCTTGATCTTATTCCATCCAAGTTGTAGATCGAGACAAAATGTCGACTCTGCCATTAAACAATGAAAGGCGACTGAATCATTAGAGCATGTGAAGATTTATCCGTGAGGTTCAGCTGTTTTAAGGGCGCCTGAAAAAGTTGATGGTTCGAAGTAGGGTGAAGAAACTGATGTAAAATTTAATGGGAAAGGGAGGAAAAACATTGGAAAAGAAAATTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 44433-44793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000014.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 44433 30 100.0 39 .............................. CTGCTGCCGATGTAGCTTCAATGTATACATCAGAAGAAA 44502 30 100.0 35 .............................. AAAGGTGCATCTGAAAGAAATCCTGAAAAATCAAA 44567 30 100.0 36 .............................. AACAGCTCATGACAGCGGAAGATATCAAGAAATTGC 44633 30 100.0 35 .............................. TATGGACGATGACTATGATCCAAGACTCTCTACAA 44698 30 100.0 36 .............................. CGCTCCTTCCCCAAATGTCGGTAAATAAACAGAAGT 44764 30 90.0 0 .................A....G..A.... | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 98.3 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TGCTCTCGTTTTTGTTCACGCTTCAATTATGTGCCTCCTTTCGAGGGTATAGGAGTATTTATCATTAATTATAAATACCGACCGTCGGTTTGTAAATAAAAATTTTATTGGCCAGATAAAATGATCGATTGTGAGATTCCGTGTTGGCATGATGATGATTCGATTGAAAAGAGATAGGCTCGAGCCTGTTTCCTTAAGTGCGGAATTTTGGAGAGGGATAACTGAAAGGGGGAATCTATTTCAGAAAAACGGGGATAGAACACGTATTAAAGAAATTCAACTTTTAGGAAGTTGGTGATTACGTGCGCATCATAGATCCAATATCTCAACTGTCGTCGACCTCCAGTAGCGTCAAAAACCCGGGGGATCGACGACAAATTTCTAACCGCCAGAATTCCTACAGCGATCAGAAAAAGAAGCTATTGCTCGAATTTTAAGATAAGTTTATAATAAAATTGTATCCATTTTCCAAATGTTGATTTTATCATAATTTTTTGGGG # Right flank : CAACTTTGCATTTTTCATGATCTCCACCGCGTTTCTGAAACCATCTCACCGCACGCGAAAACATAGACAGATAAGGGACTTCGCCAAGCCCACAGGCCCGTTGAAAACAGTGAAAACGTTGCAGGATGCGTACGAATTTTCTCAAGGAATTAATAGCAAAATAGGTTTTCAAAAAGAAACATTTCAACAACGATTTTTTTCGACACTGGCGATCTTCCTGTCACATACGGTGTTTCTGGCAACGACAGAGAGTCAATATATCGAAATAAGGAGGCTAAAAGAGGATTGATTTCATAAGACCATGCATGTTCGCTGTTCCAATTGGAAATCATGATCGTGTCCACCCCTTGGAGAGTTAGTTTTTGTCACTGTATATGATTTCCAAGGTGGTGGATTTTTTATGTGCATTTATGCATTTGTTATGCGCTTTGCAACACGTTCATTAGTTAAGAAAGATAATGTTAAATGAATGATTAAAAAAATATAATAGATAAAAACAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5563-5793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000046.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5563 30 100.0 36 .............................. TAGCTATCGCAGCTCACGCATTTCTTTTTGGCTGCC 5629 30 100.0 38 .............................. ATCGACAAATTTGGAATAAGCGGTATAACTCAAAAGGA 5697 30 100.0 37 .............................. ACAAAAAGCGTTTCCAGCTTCTCATCGAAAGGCTTGG 5764 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 37 GTTTTTATCTTACCTATGAGGGATTGAAGC # Left flank : ACGGACAATCGATCACGATGAAAACAGCGGAGTATCAAGGAGGCAAAGCATATCAGACAGACGCAGCATTCTGGAAGAAGATTTGGCGAAGCTCTATACAATATAGTGTTTTTTAGGATCGGAATAAATATAAATCGACTAACTTAATTCTAGCCGGACAAATTTTAAAAATGCCTGTTAAAACAGAAAAAGCTGAGTATTACGTCGTCAAGAAGGACGACACCCTGACTAAAATTGCAAAGAAGTACGGAACAACCGTGCAACAGTTGGTACAATTAAATAAAGTTAAAAATCCTGATCTGATTTTGATCGGCCAAAAGTTACGTGTAAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACATTTTCTTATTAGTCAACAATCCTGCAATGGTAAAGGAAAGAAGAGGTTGCTAGAGTTTTTAGATAAGTTTATAATAGCATTGTATCCATTTTCCAAATGCTGATTGAATCATGGATGTTGGG # Right flank : CCGTTCCTTGCTGTTTGACAGTTTTTTGTATAAAACCGTACATTTGTTCTTGTTTTTATATTCTGCAATCGGGGAATTTTTAAAATATGTTGAATTTTTTGGTTAAAATTATAAAAATTTTCATAATGAAGTCGATAAATAGTATAGGAGTTTATTCCACTTTATTTCTTAAAAAAGAAGGAAGAGTAAAAGATGAAAAAATTTATACTGGCATTCTTTACTTTATGTTTGAGCTTGGTAGTTGTTAATACTACTGAAGCAGCAACTCCAATTGGAGAAAACTCTTCTATTTTTATTGAAAATCTCAAAAAAGAACATCCTGATTGGGTAATAAATCCTGTAACCCAAGAAGAAGTCTCTGAAATTCGTAAAGAGATGGCTACAACAAATTCAATAACAGGATCTGCGCCACCGGTTACAGCATTATATATTGATCAAGTAGGATGGGATCTTGAAACTACAACGCCACAAATCCAATATATTAATAATGAATTAACCTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 15981-17672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000004.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 15981 30 100.0 40 .............................. TTTCATGAAAAGAAATACACAAAAGATGAATTTCAAGAAA 16051 30 100.0 36 .............................. ACAAAAAATTCATCTGCTTGTAACTCATATTTTTTT 16117 30 100.0 37 .............................. TAGCCAGCGTCGAAATCATCGGAAATACTGGTCTTTT 16184 30 100.0 37 .............................. ATAAAATCAATTCGTTTCGGTTGTGCTAATGCGTCCT 16251 30 100.0 38 .............................. TGTTTATTTGGAATAACATCTAATCATCCAACAATAAC 16319 30 100.0 35 .............................. CATCATCCGTTAGCGACAAGTTATCATCCATCGTA 16384 30 100.0 36 .............................. CATGCTTGTTTAAGCACCTTATCAATTTCCGCCACC 16450 30 100.0 39 .............................. TCGGTCGTGCCGCTGGATTTTTGGTGTTGAAATCCAACA 16519 30 100.0 35 .............................. TGCCACAATCTTTTGTCAACCAAGCAACCGCTCGT 16584 30 100.0 36 .............................. ACTTCTTTTTCTGTAAAATCTAAATCCACCTAAATG 16650 30 100.0 35 .............................. GGTTTTGAAAACTCGACGGAAGATTGCGAAGATTG 16715 30 100.0 35 .............................. TATCCAACCCCTACAGCACGGGATTGGAAAGGAGC 16780 30 100.0 36 .............................. CTGTGTAATAGCGGATAGCGTGTGTAATCTCGCCGC 16846 30 100.0 35 .............................. TTGGGTGTGTTTGCCGCTATCCCTACGTAACGCGG 16911 30 100.0 37 .............................. GAAGTTCCATCCGTCGAAATGAAAATTTCAGTGGATG 16978 30 100.0 38 .............................. TCGGCTGTAAGGCATATTTATAAACCGCTTCAATATTT 17046 30 100.0 37 .............................. CTGGAAACTCGAACACAGTTTGTTGGTCAGGTGCTCC 17113 30 100.0 37 .............................. TCTCAATAAATGCCCCTGACAAACCACCTGCAAATCC 17180 30 100.0 36 .............................. TTCACCTGCTACAATAAACGAATATCACTAAGTTGT 17246 30 100.0 35 .............................. TTGTTTCCCGGCGGCGCACCGCCACCTCTATTGCC 17311 30 100.0 39 .............................. CGCAATACACTGCCGTCTCCCAATGTATATGAATAATCG 17380 30 100.0 37 .............................. ATTGATGCGTTGGCGCTCATTCTCCACTCTCGCACGC 17447 30 100.0 35 .............................. CGGACTCTCCCCCCAGGTTCTAATCCACCATTTCT 17512 30 100.0 36 .............................. ACAGTCCAACATCCGTTGTAGTCTTCAGCCAGTTGA 17578 30 100.0 35 .............................. TTAAATACATGAGAGAAAAAGGATTTAAGAACGGA 17643 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 26 30 100.0 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TTACTGAAGAAGCATCTAAACGTTCTCACTACAATTTTAAGCAGTCTTTAAATATGGAATTCTTAAAATTATAGGCAAGTTGATTTTTTGTTATATTCTATTATCTTCCTTTCTGTTCATGGAACTTCTTCGTTTACTTCCATATTATCCGAAAAGCTTCTATTGGCCGCAGGGAATAGCATATATAATGAATCGTTTTAGGAATCAGTAACAAAAGACTCTATCGTTTCCCTGCTTTTAAAACAGCCTACGGCTCTGATATTTCAGAAAGACCGAATGGAAAACGCCGCTGCGAGACAATCAATTTTTTACTAAATCTATGAAAAAAGATTTGTCGTCGACCTCCAATAGCGCACAAACCCCGGGGGATCGACGACACATGGCCAGTCATCAAAAACCCTACAGCCATAAGGAAAAGAAACGATTGATCGAATTTTAAGATAAGTTTATAATAACATTGTATCCATTTTCCAAATGTTGATTTTATCATAATGTTTGGG # Right flank : CATAGTTGGTCGATTTACAATGAACCCATAAGCTGAAACACAAGGAGGCGATAAATAAGTTATACTGAGGACATGGAGAAGCGGAATCGATATACAGCAGGATGTAAGACGAAGGTCGTACTGGAAGTGCTGAGGGAAGAGCAGACGGCAAATTGAGCGCGATGGAATAATGATTTGTCCCTATCTTGAATTATGTCTTTGCTTAAATAACATGCTTGGACGGCGCGCATCTGCACCGCCCGCTTCACTGTTCATAAAAAAGAATCGCTTTCGTGAACTCGGTAAAGTCGGTTAGATGGTGATCAAGTATTTTTTGCAAAATGGTCAAATTAATCTCCTGGTAGTCGTGAACAGCGATGTTTCTAAATCCGACCATCGCTTTCATTTTTTGTGAAAGAAAAGGAGTGATGATGCCGTGCTGTTCTAAAAGAGAAAAAGCGTCTCGACTGTTTTGGGGGAGGCCTAGCTTTTTCTGTGCGACCATGTGCATCGCCAGGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 26564-27591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000004.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26564 30 100.0 38 .............................. AGTTTACCGTCTATCTCATATTTCTCATAGAGTTTGGC 26632 30 100.0 36 .............................. GATGACGAGCGGAGGAAGAGGAACAGCTAGAATTTG 26698 30 100.0 35 .............................. AGGTTTCGTTGGTGATAAGTAGGTGCAAACATAGA 26763 30 100.0 36 .............................. GATCACTTAATTTTGTGTTTAGACATTCAAGCAAAA 26829 30 100.0 37 .............................. TGTGAAAGATGTTCAGCGCCAGGAAAAATTGTGCATC 26896 30 100.0 35 .............................. CGTTTGAAGAAGCCAATGAGTTAGTGAAAAAATAC 26961 30 100.0 38 .............................. TCGTTTTGGTCACCGATGAGGATTAACGCTGTACGCCT 27029 30 100.0 38 .............................. CTTTTTCGGTATCCACTCGTACAAGTCGTCGATGTGAC 27097 30 100.0 39 .............................. TATTTTTACACGAAAATATAGAAGATGCTTGGGACACGC 27166 30 100.0 35 .............................. CCGATAATGTAAGGTATTCTATGATATCTGTATTC 27231 30 100.0 35 .............................. ATGCTAAATGTGAGTTCCTGCGATTCGTCAGATGG 27296 30 100.0 35 .............................. ATAAAAATGATTGTTGATTTAGAAGGGAGAATGAT 27361 30 100.0 36 .............................. ACAGGTGATGCGAATACAACAATATCCGCATTTTGA 27427 30 100.0 38 .............................. AATATGCTTGCGAGGTTATTGAATACCACTCCAAACAA 27495 30 100.0 37 .............................. TCGACGGTAGGGAACAATCTTCGCGAAGTTGGTCAAA 27562 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 99.8 37 GTTTGTATCTTAACTATGAGGGATTGAAAC # Left flank : CATTGTCCGCTTGCTGTCAAATGACACACAACGAAAACAGATGGAGCTTGCGGGGCGCGCCTATGCACTCACCCAAAATTGGGAGGTTATTTTCGAAAACTTAATTTCTGAATATGAAAAAGTATGGCGCCACCATGCGGAGAGGCTACATGCATAGCGTGTGGGGAGACAAACAGAAGAATAAGTTTATATACTTTCGATTCATTACAAACTCAAGATGTATTGATATCACTAGCGATGTTTATTTTATGTGTTTTCCGCAACTGATCAAGATCAGGGTTAATTTGCCAGTTTGGCTTCATGCACAGAAGGATGACAAGCTTCTGATGAAAGCTGTCGTCGACCTCCAATGCTGCTAAAATCCCTAGGAATCGACGACAGTTTATTTTTATAAAAAATCTTGGCACAATCAGCAATTGCCCCCATTTCTGATTTTCGCTATAATAAAACCAACCATTCCACCCAATGAGAGAAACACGGCAACATCAACATTTTTTTGG # Right flank : TGACATCAAATTGGTCATCGACACGCTAAAAAAGGCTATAAAAAAAACGGAATGTCAATGGACTCCTCCTCCATAGTGATCAAGGATTCCAATATACATCCGTTGATACAACAACGTGCTAAAAAAATACAATATAAAAGCCAGTATGTCCAGAAAAGGAAACGGTTTGGACAATGCCTGCATGGAACACTTCTTCCTCCATTTCAAGGCAGAGTGTTTCCGTCTGTACGCTTTCCGCACGGCCGAAGAAGTGAAGGATGCCGTACACCAATCTATTTGTTTTTATAACCCTCAACGTTTCTAAAAGAAATTAAATAACCTGAGTCCTTATGAATATCGGACTCAGGCTGCTTAAATGTGCTTTTTTATTCCTGTCTACTTGACAGGGGTCTCTTCACCTTTGGAGTGCTTTTTATTTTAAGAAGGTGGCGGGGAAGGGAACGACATTTACGGAAGCGGTATCGAATTCCTCCTTCTCGCATCCATGGTTCGCTGGGGAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 37201-37761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000004.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37201 30 100.0 38 .............................. AGTCTTTGCATCGCATCTTTCTGATGATCTTTGTCTAA 37269 30 100.0 35 .............................. TAGATAAGCCGCTAGACGAACGTAAGGCTTCAACA 37334 30 100.0 36 .............................. TCCAGCGTCTAAGCCTTCAAAGATTACAGAAGTAGC 37400 30 100.0 36 .............................. AAGCCCCTGCTTGACTTTTTCATCGTATACTTTGAC 37466 30 100.0 37 .............................. GATCACCTCCTTACGTTATGCGGATGTGGAGAGGAAA 37533 30 100.0 36 .............................. GAGGACCCGTTTGCGAAAAGCGCCTACCGAAAAGTG 37599 30 100.0 36 .............................. TGTTTCATAGCTACTACTGCTGTCGTTCCTGCTCCC 37665 30 93.3 37 ................C............C CCGTCCGGATTAGCTATTGAGCTAGAAAATATCCTTC 37732 30 93.3 0 .................A..A......... | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 36 GTTTGTATCTTAACTATGAGGAATTGAAAT # Left flank : TATACTGGGAAACAAAAATTTACGGACCGTCGCGGAAGAGCTGAACAATTTATGAAAAAATATCATTTGCAGCAGCAAGATAAATAATGGAAGGATAAAGCCGTACGAGACCGACCGGGAGCCAATGGTTTTATTGATGAGGGAGAAAAAATTGTTTCTCATAAACTGTTGAGTAAAAAAAGAGGATTTCTATATAAACCCAGTCTGCCTTTCCAGATGCGCCCGTTTAAAATTTTACTGGGATGAATTGATAAGCCGGATTGATATAGCTTATTGGTCATGCGATCCCCTTCGGATCGCTACGGGGTCTGAACAAAGCACAGATAAAAAATAAAGTCGTCGACCTCCAATGGCGTAAAAATCCCTGGAGATCGACGACACATACATTTTGAATGAAACGGTTGTCCGATCAACCATTGCACAAACATGCACCTCTCGTTATAATAAAACTAACAAATCGTTCCAAAAACCAAAAAGCTTAATCCATCAACATTTGTTGG # Right flank : TATCGTGTGGGATGTTAAAGGATTAGCTGAAAAAGAACGCAGAGCCAGTGTATGGTTCTACGTTCTTTTTTATATAACTTAAACGATCGTTACTTTTTTGTTGAAAAAACAACCTATAAAAAATACAGATAGAATATAGATGTATTAAATAAATACAGGATATTTTTTGTTTTATTGTTGACAATATTCAGACAATTAATTATTATGTTTTATATACGATATTTACAAAAACATAATAAAAAGAGGTGCCTGAAAATGGATAGGCAAGAGGCGGTGTATTGCTCGTTTTGTCATTCGGTGGATGTGGCAAAAATGTCTATGTTTGGAACTGCGCAGCTTGTTTCGCAATATTACTGTCATCAATGCAAAAGTGTTTTCGAATGGGTGCGATGGCGGAGGACATTGGATGAAGTAGAGGAAAAGCGATGAAAATCTGAGGGTGCGCTTTGCCTTTTGAACCGCTTGTTAGTGGAAAGACTGCTTTTGTGGAAGGGGGCCAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 48915-49077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUQN010000004.1 Anoxybacillus rupiensis strain NL1.2 NL1.1_UNI_TRIM_FEB13_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48915 30 100.0 36 .............................. AGGACGAGCAAGAAGCAGCAGGGGCGGCAACGCAAC 48981 30 100.0 37 .............................. GAGGTAGGAGATTCCTACGCTGTCATCACACGACAAG 49048 30 93.3 0 ............................CG | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 97.8 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ATTGATGATTCGTTTGAAGCAGCGGTTCGTTACCACGATCAACTGCTGCATGCTCTTCAAAAAAGAGGCTTTCCTTTTCACGATATTTTATATACGCTGCTGTTTTTAACATGTGATTTTCTGCCGGGGCTTCGTCTTATTCCGTATGGTCTATACGATGTAAAGCGCAATGACATTTTGCTCCCGGCACAGCCGTTATCCGACTGCCTCTTGCCGCATTAGCCTGCATTTTTGGTGACTCTTACATGTCGCTTGATTGTGGTCCCTTTCTCATCGGGCGGACTCGCATCAGAAAAAAGGGCGATTGATTATGAAAAAATGGTTAAGACGGAGTCGTCGATCTCCAATGGTGCAAAAATCCCGGGGGATCGACGACATATTTCTAGTAGCCAAAACCCCTACAGCGATCAAGCAAAGAAAGTGTTGATCGAATTTTAAGACAAGCTTATAATAACATTGTATCCATTTTCCAAATGCTGATTTCATCATCATTTTTGGGT # Right flank : GGCTCAAAAAAATCTCCCACCTCTGCAATGCGGGTGGGAGAGAGTTGTTAAAGGGGGGGACTTAAAGGTCGAAATCGTTTGGGTTTTTGCCGATTCGTTTGTTTTGATTTAGTGAGTGAATCCGTTCCATTTCTTCAGCTGTCAGTTCGAAATCAAAGATTTCGGCATTTTCTTTTATTCGTTGAGGTGTGACGGATTTCGGAATTGTGACCACTTGATTTTGCAAGTCCCAGCGCAGAATAACTTGTGCCGGTGATTTGCCATATTTATTGGCAATGTCGACCAGAATCGGTTCTTCTAGCAAAACGCCGCGCATTAGCGGAGACCATGCTTCCAGCTGAATCTGATGCTTTCGGCAAAAAGCATGAAGCTCTTGTTGTGTCAACCGAGGGTGATATTCCACTTGATTGACCATTGGTTTAATTTCGCAGTCGGTCATTAAGTTCTCTAAATGATGAATGTGGAAATTGCTCACGCCAATCGCGCGAACAAATCCCTCT # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //