Array 1 740847-736993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073754.1 Methylomonas paludis strain S2AM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 740846 37 97.3 34 G.................................... CCATGCATCGTCAGCCATTGGACAATGAGCCGGG 740775 37 100.0 36 ..................................... CGGTAAACTTTATAGTATCTTGTAACATGATGTGTT 740702 37 100.0 35 ..................................... ATCATATCATCACGACTATTAAATTTACGCTGTTT 740630 37 100.0 34 ..................................... GGATACAAAACGTATCCACTTTCATACTTTTGCT 740559 37 100.0 31 ..................................... GCTACTACGCTATCAAGGTTGTGGAACTTGC 740491 37 100.0 36 ..................................... TCCACTTCCCTTGTAATAGCACTGAGGATCATTTCA 740418 37 100.0 34 ..................................... CAAATCTGATTTTTTAATAGTGAGTGTTGCCATT 740347 37 100.0 37 ..................................... TGGCCAACATTGACCGCAATGCGCACTACCAAATATA 740273 37 100.0 33 ..................................... TTCAGGTAGTTTTTTAATCGCGGTCAAGTTTGA 740203 37 100.0 34 ..................................... ATCCATTTCCCCTTTAGTCAGTTCATCGCTTGTT 740132 37 100.0 33 ..................................... AAGCCACTATTTCAAAATTAACCTGAGGGTATT 740062 37 100.0 36 ..................................... GACTCATGCATAACATGGGCCAAATCTGATTTTTTA 739989 37 100.0 34 ..................................... ACCCATTGAGACATTAGCATGGCTGTCAATGTGT 739918 37 100.0 33 ..................................... GCAATAAGATGGCAATGAGCTTTCCACGCTCAC 739848 37 100.0 29 ..................................... GCACCATCCATTGTTCCATCTACAAGATC 739782 37 100.0 34 ..................................... TTGCCTAGCTCTTCTAAAGTAGCTAACATCAGTT 739711 37 100.0 34 ..................................... TCCACTTCCCTCGTGATGGCAGCCAAGATCATCT 739640 37 100.0 33 ..................................... GTATCTTCACATCATCTTCGGGGATGGAAAGCT 739570 37 100.0 32 ..................................... CTAAATAGCCAATGAATTCTTCGTTTATGGGT 739501 37 100.0 35 ..................................... CGAGAAGGGAAAAAGAGTTTCCGCTCCAGCCAATA 739429 37 100.0 34 ..................................... ATTCGTCAACTAATTGACGAATGGTCATTTTTTT 739358 37 100.0 33 ..................................... CATGTGTCCAACTGCATTGTAAATATAAATTTC 739288 37 100.0 35 ..................................... AATTACTATTAAAATTGGGGTCACTAAATTGTGCG 739216 37 100.0 34 ..................................... CGATTCGTTGAGTTCAATTATACTAGCTCAAAAA 739145 37 100.0 34 ..................................... CCTGCTACTTTGCAGGCACGGTGAACGGAAGATA 739074 37 100.0 34 ..................................... TGCCATGTTAATTTCCTTTCAAGGTTGGTGTGGT 739003 37 100.0 33 ..................................... TTAAGCGACGACCCCTTATTTATCTCTACTTTA 738933 37 100.0 33 ..................................... CATGATCTTCTCCTGTTTAGTTTTAAATTATGA 738863 37 100.0 32 ..................................... ACATATATATTTTCCATTGTTTTTCACCTTTT 738794 37 100.0 35 ..................................... ATTGTTGAAGTTGCTGTGTAGTAGGTGATTGAGTA 738722 37 100.0 32 ..................................... TGGTATCAGAGGGTTTGCTTATGCTGAATCAA 738653 37 100.0 35 ..................................... TACTGCAGATAGTTATTCCAGATGGAATAGTTTGG 738581 37 100.0 37 ..................................... CCAATCCAGGATGTCCGGCTGAAGCTCTCGCTTTGCG 738507 37 100.0 35 ..................................... CTAAATACGGTTTACATTGTCTGCCGCTAACTGTT 738435 37 100.0 34 ..................................... GTCCAGGATTTCTTCTTCAATACTTCTCATAAAC 738364 37 100.0 32 ..................................... CTTATCTTCAATTGGTACATTAGGTCGTATTT 738295 37 100.0 33 ..................................... CTCTCTAACAGAGAATGCATACAGCGGCTGTAT 738225 37 100.0 36 ..................................... ACATATATGTTTTCCATGACTCTCTCTCTCTTTTTT 738152 37 100.0 31 ..................................... GAACTCAATATCGTCAGGCAGGTTTTTTTCT 738084 37 100.0 33 ..................................... GAGTTTTCATGTTTTTCCCCTTATGCTAAATAA 738014 37 100.0 35 ..................................... CTCATACTGAGAATAGCGAGTGTCAGTGCTTATTT 737942 37 100.0 32 ..................................... CGTAATTAGCGGGTGATTCGTCGTTTATTGTT 737873 37 100.0 32 ..................................... CGCGTGTTGGCAGCGTGACGAACGTAATCGCC 737804 37 100.0 32 ..................................... TAATTTCAGCGCACAAATTTGTCCGGTCTGAG 737735 37 100.0 35 ..................................... TTTATATCCATCATTTCAAGCGCTTCAGCGTCCAA 737663 37 100.0 32 ..................................... TGATATTAATATCAAAATCAGCAACAAAATCG 737594 37 100.0 34 ..................................... GAATTTTGCTTCGTATTCTATTGCTTCAGCCGCC 737523 37 100.0 34 ..................................... AAAGCAGCTTCTTCCAGTTTCGCGTCTTCCAAGC 737452 37 100.0 31 ..................................... ACAAAATAGCATGTGCTCGGTGTATGTTTAA 737384 37 100.0 35 ..................................... GGATAAATTCTCAGCATCAACAACAGCTTGAGCAG 737312 37 100.0 34 ..................................... AGATGGACGCATACAGTCAACTAAAACCGCAGTT 737241 37 100.0 34 ..................................... TTCATTTTAATCCCCTAATATAAGTTGAAGTTTT 737170 37 100.0 34 ..................................... TCATTTTTAGAGTGAATATCAACTACCTCTGTAG 737099 37 100.0 33 ..................................... TGCTTTTACGGTAAGTTTTCTCAAAACCTTAAT 737029 37 86.5 0 ...............T...........C...C..AT. | ========== ====== ====== ====== ===================================== ===================================== ================== 55 37 99.7 34 ATTTAAACAAATGACCTTATTAAGAAGGGATTAAGAC # Left flank : GAGAATGGGCATGCTGGCCTATAACTGCTTGCGGCTGATTGGTCAACTGGGCTTGACGGGTCACTTGGCACCGATACGCCATCCTGCAAAACGTCGGCGGTTACGAACCGTGCTGCAAGAAGTCATGTATCGAGCCGCTCAGGTCATCCATAAGGCCCGGCAATGGTGGCTTGATTTGGGGCACGATTCGCCAGTCGCTAAAGTATTCGCTTTTTTGCAGGAGCGATTGGTGGTACAGCCTGGCTTTGCATCGGGATAATCCTGGGAAACAGAAACGGAAACGCAAGGTTTGAGCTGATTCTCAGGATTGAGAAGAGGATTGCTTGTCTGGATGTCTGGTTTTTCACTCGTGGAGAGCGGCAAAGCCGGAGAAACGTGGGATTTTTACCGTCAGGGGGTTGATGGGCGGCAGTTAAGCTGTGATGGGGGAACGTTATTTTTTAAAAAAAGCGTAAAAAACGCAGTGGCTACCCCGTAAACCCAAAGGAACACGGATTCAG # Right flank : AACCGCTCTTGCCAAACTATTCCTGCACAGTACCGCTAAGGTTGACAAGCTTGCGAACTACTGACTTGCGTTGACATTGCGAGTATGTTGTATCCCATGACTAATCGGCAATTATATTTAGCAGCTTACGATATTTCCTGCAATCGGCGTTTGCGTAAAGCGCTTTATGTATTGCGAAGCTATGCGTCAGGCGGTCAGAAGTCTGTATTTGAATGCTTTTTAAGTGCAGCGGAAAAAGCTGATTTACTGGATGCTATTGCCGAAGTTATTAACCCTGAAGAAGATCGTTTTATTTTGCTGGAATTGCAAGGTGCCAAGTATGTCCGTACTTTGGGAAAGGCGGTGTTACCTCAGGATGGTTCGTTTTTTTATGTGGGATAGTTTATGGGCTGTTTATATCTGGATAGAAAAAACTTGGCTTTGAAGCTGGATGGCCAGGCATTGGCTTTGTATGAGGATGGTGACAAAAAAGGTACCGTGCCTTTGCATTTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATGACCTTATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 742963-742584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073754.1 Methylomonas paludis strain S2AM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 742962 37 100.0 33 ..................................... CAACATTGACCGCAATACCCACTGCAACATAAC 742892 37 100.0 29 ..................................... AACCATGCTTTGATGGTTTCGCCGCTTAA 742826 37 100.0 30 ..................................... AGTTGATTGATCGGCTTAAGTAAAATTATT 742759 37 100.0 34 ..................................... CGGATCCATTATAGAGATGGTTGACAATGAATAT 742688 37 100.0 31 ..................................... GTAGCACAGAACTTCTTTTCCGTAGGTGCTA 742620 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 100.0 32 ATTTAAACAAATGACCTTATTAAGAAGGGATTAAGAC # Left flank : AAACAGCACGCTTTACGGCTAATGGCGGCTGGCTGGAAAGTTATGCTTATGGCTTATGCTTAAAACTAAAAAAATCCAAAGGTATACAAGATATTGCAAATAACATTACCATTGAGAGGCAATCAGCCTCAGCTAATCCAGTTAAAAATGAAATTGATATCGGCTTAATTTATGCTAATAGCCTGCATATTATTGAGTGTAAAACCAAACGATTTAAAGAGAATAATGATACTGACATTTTATATAAACTGGACAGCTTGCGGGACTTAATGGGCGGCCTGCAAAGCAAGGCCATGCTGGTTAGTTTTAACCGGTTGGAAAAATCCAGTCTAGCCCGTGCCAAAGAACTTAAAATTGAGCTATGCTGTCACAGCGAATTACGCAATTTACACCAACACCTAGAACATTGGCTAAGTAAAAAAGATAACTTTTAAAAAATGAAAAATCCTGTCAACCCAGCATGTAATATATTGATAAAAAAGGAGAAAAAATGCAAAGCT # Right flank : CCCTAGCTAGTTGCTTATCCGCGAGTTTCTGTAATATTTAACCTGAATCCGTGTTCAGGCTCGCATAATAACGCATAAGCCAATGATAAATAAGGTATAATATAGACTTTCTGTGTTCACCCAATTTGATTATGGCACGTTTTAAGCTAAAAGAATCCAAGAAGGAACTGACTTCCTATGCCGGGCTGTCGTTAATCGGCCAATGCCTGGAAGCCATCAATGTCGAAGCGGTGGTGGATGGACAAATTCCGGTATCCCAAGGGATTAAGACCTCTGATTTATTGAAAACGATGGTCGGTCTGTTATGTATAGGCAAAAGCGATTTCGAAGCAGTTGAACCGTTTCGTGAGGATCGTTTTTTCAAGAAAGCATTGGATGTACGCAAGGTTCCTGGCAGTGTCTGGCTGCGGCAACGGCTTGATCGTATCAGCGGTAAGCTACTGGAACCGTTGGACGAATGTTCGATTCGACTCATTGAGCGAATACAAGCCCCGATCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATGACCTTATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 972170-967220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073754.1 Methylomonas paludis strain S2AM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 972169 28 100.0 32 ............................ GTCATCCGGCCATCTGCTGGCTGCCCGGAAAT 972109 28 100.0 32 ............................ CAATTTCGGCGAGGCCGAATTCATGACGTAGA 972049 28 100.0 32 ............................ TAATTTGTATGCGGCTCAAATTGCTACGGGCC 971989 28 100.0 32 ............................ ATAATCAGCAGCCGTTTGTAAATTTGAATAGT 971929 28 100.0 32 ............................ CGTTTGCGCCTGTATTGACACCGGCGCAATAG 971869 28 100.0 32 ............................ ATAACTGTTGAGGGTTGGAGTAGATAATGAGT 971809 28 100.0 32 ............................ CCGCTGTGCCTGGCAGTAACTGCCCTATGCCA 971749 28 100.0 32 ............................ GTTGTTATAAAAAATGCAATCAGACGTAGCTT 971689 28 100.0 32 ............................ AGTGTCATTGATCGGTACAATAGCGCCATTTC 971629 28 100.0 32 ............................ TTACCATCACGCCAGAAATGCAGTGTTGGAAA 971569 28 100.0 32 ............................ ATAACTGTTGAGGGCTGGAGTAGATAATGAGT 971509 28 100.0 32 ............................ GTAAACGCGGACGTACTCGCCTTTAACACCAC 971449 28 100.0 32 ............................ TTAAACAACCGGGCCACCCCGATTCGTTGAGT 971389 28 100.0 32 ............................ AAATTATATTTTATTAAGCAGCATTTTTAATG 971329 28 100.0 32 ............................ ATTATTAAATGGTGCCCTAGCAATTACTGATC 971269 28 100.0 32 ............................ GTTTGCTGAAAAATTCTTCGCCAGTTTGCAAG 971209 28 100.0 32 ............................ ATCGACATCTGGACTGAGCGCTAATAACTGGG 971149 28 100.0 32 ............................ TTTAGTATCAAACACAAAAACCGGCGCGTTTG 971089 28 100.0 32 ............................ GGTGGCAGTCAGTGACCCCAGCCCCGAACCGG 971029 28 100.0 32 ............................ GGTGGTAGTATTCCCGCGTGGGTGGCTGATCA 970969 28 100.0 32 ............................ CCGTTGTTGAAAACCTGCGATTCATCACCCGC 970909 28 100.0 32 ............................ AAATAAAAAATCATGGCGGCGATTCCGACAAA 970849 28 100.0 32 ............................ TAATAATCGCGCGGTTGAGAAATGTGTTGGAC 970789 28 100.0 32 ............................ CTGGTTAGGAATAATAGAACCTAAATTACTTT 970729 28 100.0 32 ............................ TCTGGGAGTAAAAACCTAATGTCATTTGATTT 970669 28 100.0 32 ............................ ATATTGATTATGCTATGCAGGACACTAGAGCA 970609 28 100.0 32 ............................ ATCGCTCAGTTTGGGATTAACCTACGAAATTG 970549 28 100.0 32 ............................ AATGGTGTCAATATTATTGATGTCCTGATAGC 970489 28 100.0 32 ............................ TAGACGACAACGAGACGATCATTAGCACAATG 970429 28 100.0 32 ............................ TTCTGGAGCCGCTCCGATTCCCGGCGGCGCAG 970369 28 100.0 32 ............................ AACTCAGGTATAGACGCAAGCACAGCGGAAAC 970309 28 100.0 32 ............................ GCCTGCTCCGGCATACAGCCACGGGCAGATCA 970249 28 100.0 33 ............................ CGCTGGGAGAAATTCTTTGTTTTGTGCAGTATT 970188 28 100.0 32 ............................ TTGCCAACCCCTTGCCCACCGGCAATGAGCAA 970128 28 100.0 32 ............................ TAATGACGGTCCAGGCGGTGATTATTCAATGG 970068 28 100.0 32 ............................ CAATATCGGTTATATCCTGACTAGTTAAGGTG 970008 28 100.0 33 ............................ TGATAGTCTGGATTTTGGCTGTATAGGCTATCG 969947 28 100.0 32 ............................ CGTAAAATAGAGCCAGGTAGACCGGGCATTTA 969887 28 100.0 32 ............................ GCTAGCGGGGCAAATATTGTGCCTAATGGCAC 969827 28 100.0 32 ............................ TGGACGCAGTCGTACAACGGTTTATCAGCTAT 969767 28 100.0 32 ............................ AGCAAGCATTAACGCAATCTCTAGCAAATAGT 969707 28 100.0 32 ............................ CATTTAGGCGCGTCAGTTTGCAAATAAATAAT 969647 28 100.0 32 ............................ CAACTCACTGCGCAAAAAAAATCAATCATCAC 969587 28 100.0 32 ............................ AAATTTATTTGTTCGGCTATAATCCTCTTTTT 969527 28 100.0 32 ............................ AGCAGGCGCTAACGCAATCGCTAGCAAATAGT 969467 28 100.0 32 ............................ TGGTCAAAATGCCGATCAAGCCAGGCCCGGCC 969407 28 100.0 32 ............................ GGAGGGAGAGGCACAATTAGGGCGGCGTCAAT 969347 28 100.0 32 ............................ ATCATCCAGCAAAAACAACGCCGGATACGTAG 969287 28 100.0 32 ............................ CGCCGCACAAACCGGCGGCCTTCAGGGGTAGC 969227 28 100.0 32 ............................ ACCTAAAAAAAGCGAGACACCTGAGTAGGACA 969167 28 100.0 32 ............................ ACCAGATACGATGTCTCCCACGCTATTAAACA 969107 28 100.0 32 ............................ ACCATCAATCCAAATTGTAGGCGTATTCGTAT 969047 28 100.0 32 ............................ AACCACAGTTCCTGTTTGTGCACTGTCACCCC 968987 28 100.0 32 ............................ GGTTTACCAATGGCCATATAACACGCCTCAAC 968927 28 100.0 32 ............................ TCAAGCGCAATCCACCCATTATCCGTCATCAA 968867 28 100.0 32 ............................ ACGGTCTGGAATCTCAATAACGGGAGGGAGAG 968807 28 100.0 32 ............................ TGTTGGCCAATCTCGTCCAGCAGCTCACACGC 968747 28 100.0 32 ............................ ATGGATATTCGATATCAAAATATTAACGTAAA 968687 28 100.0 32 ............................ AGGTAGATAATGTGATGTTTTGGTGGTTTGGG 968627 28 100.0 32 ............................ AACCGTGGGCACGTTTTCCCCCGCTGCGTTAG 968567 28 100.0 32 ............................ TCACCACCGCGCTCGTATCTTGCAATTTTGTC 968507 28 100.0 32 ............................ TCCAACAGAACACGCAAATCCAGCTCCACATC 968447 28 100.0 32 ............................ AATTAGGGGTTCACGGGTTCTTGGCATTTCAA 968387 28 100.0 32 ............................ ACATTAGCAATGTATACAGGCGCGGATGAAGA 968327 28 100.0 32 ............................ GCAGATCCCGCTACCGTGGCAGCTGCCGCTAT 968267 28 100.0 32 ............................ TTCGCTATTCTGGAAATGGCGCATCATGTTGA 968207 28 100.0 32 ............................ AATAATCTCTGATGGCGCCATTAACCCTCTAA 968147 28 100.0 32 ............................ GTTGCGTCATTGGCATTCATGTACGGCTGCAC 968087 28 100.0 32 ............................ TCATACATGCCATGCAATACTTGATAGGCATT 968027 28 100.0 32 ............................ TAATTTTTCTCCAATTGAGCCGGCTTTCTTAA 967967 28 100.0 32 ............................ ATCAATCGGCAGCATAAATGGCCTAATTGCTC 967907 28 100.0 32 ............................ ACTCGTTACCGCAGACTGACCATTAACGGTAT 967847 28 100.0 32 ............................ GTTGGCTGGGATGATGCGCGGTAGCCACGCGG 967787 28 100.0 32 ............................ TGGTTGCACACTGGGGATTCATTTTCTCAAGG 967727 28 100.0 32 ............................ AATGGTTAACATGTCTTGCTCCTTAATTGCCG 967667 28 100.0 32 ............................ AAAACGATGCGCTCGATGTGTTGTCAGGCGGC 967607 28 100.0 32 ............................ AATTGTTACAAAATTTACCGCATTGATATTTA 967547 28 100.0 32 ............................ ATCGAGGCGATGGCGGAGCGGTTGGCGGATGA 967487 28 96.4 32 ......T..................... CCAAGGCCAACAAATCCAAAACCTCAGTCTCT 967427 28 100.0 32 ............................ TATCTCGCCCAAATGAACGGTGGATTTAACGA 967367 28 100.0 32 ............................ TGAACCAAATCTACTGCGCCACCCTCAATCGC 967307 28 100.0 32 ............................ CATAGTGGTCGCCGTGATGGCGTTCCGCAAAA 967247 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================= ================== 83 28 99.9 32 GTTCACCGCCGCTCAGGCGGTTTAGAAA # Left flank : GTATGCCACTTGCCCCACCATGTTCTGCCAAATGCTCTTCGTGTAACGCCAGGATTACAGATTTTTCAACCCAAATGACAGGCACTATTTTGCCAGCTCATGCAAAACAGCACGACGATTTTTCATAATCTGCCTAGCCTCAATCATTTGCTTTTCAAATTCCGGATTGTAGGGTGTTAGTCGATAACCCTCGGGCTATTCAGTCAGATAGACAGTATCGCCTTTTGCAAGATGGCGTTTATCCAAGACTTTCTTGGACAATACGATGCCTACGGAATTTCCAACAGTTGTAAGCTTGAATGCAAAAAATAATATTGTGACCTTGATTCTATTTTGCCAGTATCGGGCAAATAAATCCGGCAGTAAAAAGGAATAATTTTTGATGAAAAAATTAACCAATACAAATCAATTGGTTAAGAAACAACCTAAAAACATTCGTTTTTGATGTGAAAAAGCCTGTAGCTCTTATATACTGTGGCTGCTGGGATATAACAGATCGG # Right flank : GATTTGTTCAACATACAATCAAGAGCGAGCAACCTTTGATAAAGGCTACGCTGCGAATTCCTCGATTCCACTGCGTTGCATCGAGGCTACGGGTCGCGATGGTGCTGGGTGTTTTGCGATAGCTAAACACTCTGCACTCGCGAAGTTTTGGTGGCTTGCCTGGCGGCTAAGCCACCCTACTGGCGGTCGTTTTGATTAAGGTTATGTTGGTGTTTGCAGTTGATTTTGGTTGAAGCGGTGGTGGGTATTGGTGAATTCTGCTGACGCTGGTTTGATTTAGGTTGCGCTGCGAATTCCTCGATTCCACTGCGTTGCATCGAGGCTACGGGTGGCTTTGATTAAGGCTGTGTTTGTGTTGATAGCTGATTTTGGTTGAAGGGGTGGTGGGCATTGGTGAAGTCTACTGGCGCTGGTTTGATTTAGGTTGCGCTGCGAATTCCTCGATTCCACTGCGTTGCATCGAGGCTACGGTGTAGTGGTCTAATAAAAACGGACACATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCTCAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3286133-3283540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073754.1 Methylomonas paludis strain S2AM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3286132 29 100.0 32 ............................. GCAAAGTTAAAATCGCCGGTCTTCCGATTTCC 3286071 29 100.0 32 ............................. CTTATGCCTGTTCTTACCCGGCTGATGGATGC 3286010 29 100.0 32 ............................. GCATCTGGAAATTTATTAGACAACAAACCAGC 3285949 29 100.0 32 ............................. TATACGCCATTAACATCAGGCACGGCTCCGCT 3285888 29 100.0 32 ............................. TTTATATGCATCTGGGTTAGGATTAGGTGATT 3285827 29 100.0 32 ............................. TATTTTCCGAGTTGAGATAAATTTAATGTCAT 3285766 29 100.0 32 ............................. TTATGTACGAATTTCTGCGGATGATTTTCACA 3285705 29 100.0 32 ............................. AATTCATTGGCTATTTAGCCTAAGTGGTCATC 3285644 29 100.0 32 ............................. GCCAAGAGTGCATGATTAGGCTGCCTGGCGTT 3285583 29 100.0 32 ............................. TTGATCCGATCATGCTTAACGGTAAACCGGTA 3285522 29 100.0 32 ............................. ATTATGACGCCGGTACCGAAATTAATGTTACC 3285461 29 100.0 32 ............................. CCGGCAGATCGAGAAAATACCATGGCGTTGCG 3285400 29 100.0 32 ............................. CGATAGAGCCTAGTTTACATCCCGATTATGTA 3285339 29 100.0 32 ............................. CAAAAAGCCGGGCAGCGTCATTGATAATGTCA 3285278 29 100.0 32 ............................. TCGTACAACGGTTTATCGGCTCTTGGCGTGGG 3285217 29 100.0 32 ............................. GCTAATGGTTACGGCGATATTTGGGAATTTAT 3285156 29 100.0 32 ............................. CGCGGCCACGTCTTGAACCCTTCATACACCAA 3285095 29 96.6 32 ............................C ACCGGATTCGACGGCCGTTATCTCATTGATGT 3285034 29 100.0 32 ............................. GAACAATTAAAGCGTTTTTTATTGGCGCTGGA 3284973 29 100.0 32 ............................. AGGTTTTGGACGCGGAAGCGTTGGTGCTTTGC 3284912 29 100.0 33 ............................. ATCGTAGAATTCATTGGTCAGATAATGTGGGGA 3284850 29 100.0 32 ............................. TCAATTTATGATACTACCGCAACACAAGCGCT 3284789 29 100.0 32 ............................. ATGGGTTAAATGCTTGCCATTGTTGCTGTGTC 3284728 29 100.0 32 ............................. GCGTTTCGGCGATAGGAGTGGTAGCAAATACC 3284667 29 100.0 32 ............................. GCTTTTTCAGACCGCCATACAAAGAGCCATCG 3284606 29 100.0 32 ............................. CAGTAGGATTAACCGGGCCGCAATATGTTCAG 3284545 29 100.0 32 ............................. TTGCTGCAACTCAGAATTGGTCATGCCAGAAA 3284484 29 100.0 32 ............................. GCCGTTAATCTGCAAACAGGTGAGGAATTTTT 3284423 29 100.0 32 ............................. TCCAATATGTTACTAGCCACGCTGACATGCGG 3284362 29 100.0 32 ............................. ACTTAGTGATCATATTTCTATCCCATCTTCAA 3284301 29 96.6 32 ............................A TATTGACGTTTTATAATGAAACAAATTCCGGC 3284240 29 100.0 33 ............................. GCCCGTACTGCTAATGCCGGCGCAACAGCCGTG 3284178 29 100.0 32 ............................. CAGTTTGTCCCCAATATCCATTTGAATCTTTC 3284117 29 100.0 32 ............................. GTTGGCAAAAATGAAAAAAATTCTCTCGCATT 3284056 29 100.0 32 ............................. ACTCGCGCGCTTAAATCCGTCTGGAATTGTTT 3283995 29 100.0 32 ............................. GCAGGGAAAATAGTTTCACCGAAACGCTGTAC 3283934 29 100.0 32 ............................. TCCCAGTCTAGCATCAGCCTCGGCGATGGCTC 3283873 29 100.0 32 ............................. GCTTAATCCAATATCGGCCAGTGGCTTAATTG 3283812 29 100.0 32 ............................. AAACCCGCAGGCATTGGCAAGCGCGGCATTAA 3283751 29 100.0 32 ............................. ATGACATGGCCGAGCCATCACGAATTATTGTT 3283690 29 100.0 32 ............................. ATGCCGCAATGGTTCGTAATGTCATGGGTGAC 3283629 29 100.0 32 ............................. CTTGCACCATCCAAGCTTGCCGCAATTGGTCT 3283568 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.7 32 GCGTTCCCCGCATATGCGGGGATGAACCG # Left flank : ATCCTTAAAAAAATTATTCCCACCATCGAAGAGGTGCTGGCGGCTGGTGAGCTTGAACTTCCCAAACCCACAGAAGAATCCATAGCGCCGGCTATTCCCAATCCCGAGAGCATAGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCACCCAGGTTGCGCGGTAGATTAGCCGTGTGGTTAATTGAAATTCGTGCCGGCGTTTATGTTGGTGATTTGTCTGCCAAAGTGCGAGATATGATTTGGTCGCAAATAGAGCAGGGAATAGAAGATGGTAATGCGGTAATGGTATGGTCTACCAACACCGAATCGGGCTTTGATTTTGTCACCCTGGGTAAAAATCGCCGCCTGCCGGTAGAGTTGGATGGGCTTAAATTAGTTTCGTTTTTTCCTCCCTCCGAAGATGAAAATCAGGCTCTTTAACAATTTGGAAAATACCGAGAAAATCGGTAGAAATTTAGCAGAGTCATTTCTGTTTAGCTAACAATAAGTTAGAATTAGT # Right flank : TTTTAGGGGGCCTGTAAACGGCCTTCCTTATGATGAGTAGATACAAATCCACTAACTATTCTTTGATGAAGGTTACGCTGCGAATCCCTCGATTCCACTGCGTTGCATCGAGGCTACGGGCTTTCAAGTAGCCGATTTTTTTGCTGTAAACGACACAAAACAGCAAACGTTCTTGATACAGTGATGCGGAATCGATTTACGCTACGCCAAGTGCTAAAGTTTGTTGGTATACCTTAACTCCACATTCTCAGCGGCCAAGAACCGCCGTAGTTTAATCAGCAATTCGTCGCAGGGCCGCACCCGCCATTCGTCACCCAGCTGCAGTATGGCTTTGGCGGTGGGGGTGGTGTAATCTATACTCACTGGACACATGCCGCCGGCAAACGGCTGCAAAATGGCCAGCAGCTCATCGCTAAATGGGCGCTCTGCCGGCCATTCCGCGTGATGCCAGCGCAATACCAGGCCTCTGGCAAATACTTCTCTGGCCTGATCGATGCTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCATATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //