Array 1 228432-228665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPW010000001.1 Lactonifactor longoviformis strain MSK.1.4 LPIFOOOC_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 228432 33 100.0 35 ................................. CAGCCCGTACCCACCAGTACAGACGCTGAGCGACA 228500 33 100.0 34 ................................. CCTTTTGTCTAAGCTGGAGACATCCCCGCTGTGC 228567 33 100.0 33 ................................. ATGATATCAACTCCTTTGATACCATTATATGAG 228633 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 100.0 34 GTCACTGTCTGCGAGGGCAGTGTGGATTGAAAT # Left flank : TCCATTATATGTTTGGTATAAAATGTGATTTCAGCAGTGAGAGCGAAGCAAAGGATTTCTATATCAGAAAGATAGCTGCACCAGTATATCGGAAAATTTGATATCTAAATTTAGCATGTATAAATGGGCATTTTTGTTCAGCGAAAAGTCTGCCTGGGGTATTCCCTCATTCTCCCACGTTTTACCGAATTTAGTAGAGGCTGCTCCATTCATCGGCAGCAAGGAAACCATTCTCATTGCCCCTATAACAATGTCCCCCATTGTAATTTTTATGTACTTGCTATTGCACTTTGGGCAGTGGTTTAGAGGCTGAGATGGGGACTTGTCAAAGTGTTTTAGGTGCGAACCCCCAGTAAACATAGAAGTACTGGGGGATTCGCACCTAAACAAGAGAACAACTGTTCGCGTAAAGGGGCAAAGGAGAGCATGAGAAATTGTATATTTGTGTGGTATTAACAGATTTAAAGTGATAAAATGAAATAAAATTATATATATTTGCT # Right flank : TTATCACTACTCAGCCCTATACGTTTATCGACTTACGTCACTGTCTGCGAGGACAGTGCGTTGTTTTTTGTTATGTTACTAAATCAAATTGAGTTAACATAATCGGGAGGGCATTTGCGCTCCCGAAAGTAACTACAGCAAGTGCAAATAGTCTGTCCACGACAAAGCACAATGTAGTAAAAAATTCTATTTGTATAAACTTTTCCACTTATCAGGTGAAAGTAGAAAGTATTATAAAATGCGGCAATTTTTGGGCATATGGAGCAGTAGCATGAAATATTATGAATAATGCTGGTGAAGAAAAGATAATAAGGCTCTTATATGTTATAATGGCATAAGACACTGCGGCATGAAATATTATGAATAATGTAGGTTTAGAATAGATAATACAAACATTATGTGTTATAATATGTGTTAATTACGGACATAAATTATCTGCCTGTTGTTATTCTTTCATTAAAGTACAGAGAATGGAAAAATAACATAATCAGATAAGCATT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTGTCTGCGAGGGCAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 233222-233657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPW010000001.1 Lactonifactor longoviformis strain MSK.1.4 LPIFOOOC_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 233222 33 100.0 35 ................................. CAGCGCATCAATAAACGAGATAAACGGGCTTGTAG 233290 33 100.0 33 ................................. TAATAATTTAATCTGCGAATCATAGGCCTTATA 233356 33 100.0 34 ................................. CAAAAAACTATTCACAATACCATCCATCGTCATA 233423 33 100.0 34 ................................. TTGAGAGACGAAACCATTAAGACTACTAATGCTA 233490 33 100.0 34 ................................. CTCCATTGGAAACATCAAACGGCACTGCATTTAA 233557 33 100.0 35 ................................. TTTTCAACGGGACGGAAAACAATATGCCGTTGAAA 233625 33 97.0 0 ........................A........ | ========== ====== ====== ====== ================================= =================================== ================== 7 33 99.6 34 GTCACTGTCCGTGAGGGCAGTGTGGATTGAAAT # Left flank : ATGGCATTGGGTTGGGAATCTAAAATACCGGATCTTCTTAAGCTGGCCGGAATTTAATATTCTAAGGACTGTCAGTTAATACGGAGTTTTAGTCCTTGTAGTATATAATAAGAACATTCCGGCAGGAATCAGGAGTAGTTATACTTGATTTTCCTGCGGGAGTGTTCTTTTTCTTTCATCTAAAAATATACCGACGATGGGAATATGATAAAAATAATGGCCCTAATTTAAAAAGGAACTGTCAAAGCCCTAAGATAAGTGACGAGAACTTGAGAATGTTGAGAAGCTATTGTATATTTATCGAGAAAGAAGAATGCAGTAAATCTTACACATTATTTGGTGCGAATGTCAAGTGCACATAAAAATACTGGGAGATTCGCACCAAGATAATTGGAAAATAGTTATCATTAAGGGGCCAAAAGGTTAAGGGAAAACTTTAAAATTGTTTAGTATTAATATATAAATGGAAGATAATGCAAATGTTATTGTGCATTTTTGCT # Right flank : TAATGGTGGTTACTGTGAAGGAGAAAGGCTTAAAGTCACTGTCCCCGAGAACAGCTGATTATAAAAACATCGGGCTACGCAGATTGTGGATGGCAGCAGATATGATTGCCGGAGACCTGATTTGTTCTAAAGATTTTTTCATGAGCTTCTTATAAAATAATTTAATAAATTAAGACAGGGGCAGCTGAATCCTCTGGGCAGTGAGCTAAGAGCTGGTATCATAAATGTGATACTGGCTTTTTTTGATGGAAAAATGCACAAAGGAACATAAACATCCGGATGTGCCGAAGCAAAAATAACGTATATGGATGTGCGCTTAGAAAGAAATACGGTAAAAGTACTAAATATATAGTTAAACACTCCCAAAAAAGTGAAAAAGTATACAGTCAGAATTAAAAAGTGAAAGAGACAAAAATTAAAAAGTGTTAGGATTACACCATAAGATAACAATACAGGACGGAGGAGAGTTAGATGAGAGAGAACAGATTCTCTTTAGATGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTGTCCGTGAGGGCAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 20809-21513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPW010000041.1 Lactonifactor longoviformis strain MSK.1.4 LPIFOOOC_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 20809 33 100.0 35 ................................. CTCTGGATCCTGCGGCAACAGCGCATACACTGCAT 20877 33 100.0 34 ................................. GACTGGTACGAAAAGGACCGCAGGAGGGACCTGG 20944 33 100.0 34 ................................. AAATTCAAAATGACAAATATAGTCTGTTACAACG 21011 33 100.0 35 ................................. AGCCATCTTTATGAAAGGCGACAAAGGCAACAATT 21079 33 100.0 34 ................................. ACCATATCACGGAATACAGGGATACAACATTGAC 21146 33 100.0 34 ................................. ACGCCCGAACCAAGGGCTACCACACCCACAGATA 21213 33 100.0 33 ................................. CGTGCATGGTACTTATCAGCATAATCCAGCAGA 21279 33 100.0 34 ................................. ATGCCAAACAAAAAATTGGCATGATCATGTTTAC 21346 33 100.0 35 ................................. AGCCATCTTTATGAAAGGCGACAAAGGCAACAATT 21414 33 100.0 34 ................................. ACCATATCACGGAATACAGGGATACAACATTGAC 21481 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 11 33 100.0 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : GTGATAAGGTGCTGGTACTGATTACATATGACGTGAATACAGAGGATGCAAGCGGAAAAGCCAGGCTCCGCAAGGTGGCAAAGCAGTGCACAAATTATGGTCAGCGGGTTCAGAACTCGGTGTTTGAATGTGTGATGGACTACGGAAAATGCAGAGAGGTGAAGCATATTCTGGAGGAGATTATTGATAAGGATAAGGACAGCCTGCGCTTTTATTATCTGGGAAATAATTACCAGGGAAAGATAGAACATATTGGCGCAAAGGAAACGTTTTCCGTAGAGGCCCCGCTGATTATCTGATGAGTGCCTGTTGGTTGTCTGATCGTAGTGGGATTCACGAAGTGCGAATGTGAGTTGCACATGATTTCTTTGGGGGATTCGCACTGGGTTTTGGGGTGTTTTGGGGGTTGAAAAAGGGTGATTTTGAAGTTTTAAAATCGTTTTTTGTAAAAATATATAATTAGAAGAAGGATATTGCTTTGGAAATTGTGCATTTTTGCT # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 150563-151804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPW010000005.1 Lactonifactor longoviformis strain MSK.1.4 LPIFOOOC_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 150563 33 100.0 34 ................................. CAAAATGCCGGTGTTGGTTTGGCGGCTGCGGGAA 150630 33 100.0 33 ................................. TGTCTGTATCCGTTCCCTTTCTTCTGCATACCA 150696 33 100.0 34 ................................. TCATACCGTACATTTCCTTGACGCAAATTTACAC 150763 33 100.0 35 ................................. TGTACAAGCCAGAGGAATGGGGAAAGGAGGACAAC 150831 33 100.0 33 ................................. CTCCAGCACTTGCAATCATTGCATCTACGTTTA 150897 33 97.0 34 ........................A........ ATATATAAATGTCATTAATCTTAAGTCAATCTTA 150964 33 100.0 34 ................................. ATAAGGGAGACAGGGAAGCATCCATGAAGCTATA 151031 33 100.0 34 ................................. TTCCCACTCCGGCAGTGGCCGGGAACAGTTGATG 151098 33 100.0 34 ................................. CTACAGATGGCAGTAACTATACCAGCATATACTT 151165 33 100.0 35 ................................. TGCACACTACATCAGTCCTATAGCCATATGGCTCG 151233 33 100.0 33 ................................. AACAGGGACTTATGGCAAACCATAACCTCCTCC 151299 33 100.0 35 ................................. TTGTCAATGGCAAAAGAAGGGAGGTGCCAAGATGC 151367 33 100.0 34 ................................. AGCAAATGCAGGAGCTAACGGCTCAGGAACTTGC 151434 33 100.0 34 ................................. TGCCGGGAGGAGACCACCGGAAGGCTGATACGCG 151501 33 100.0 37 ................................. TTGACTATGCTGATTTGTACCATAAACGTAATGAACA 151571 33 100.0 36 ................................. TCAGAGGAATCAAAAAATAAGATGATGACCAGGGTA 151640 33 97.0 33 ...........................A..... GAAGTCATGAGTAACGGGAAACCAGAGATTACA 151706 32 87.9 34 ..............-..........T....G.G CATTGTCAAATCACACAATACGTAGTAAAATATA 151772 33 87.9 0 .......T........A...CA........... | ========== ====== ====== ====== ================================= ===================================== ================== 19 33 98.4 34 GTCACTGCCTGCGAGGGCAGTGTGGATTGAAAT # Left flank : GATCCCACAGGGGGAAAGGTATATGATGCTCTGAAGATAGCTGCGGACAAAGTTGAAATTGAGAATATACCGGCACAGGAAGCGCTGGACGAGGCACAGAAGACAGCGCAGGAAGCGCTGGACGCTCTGTAATCATCTGCAGGGGCGGGGGAATATGGAAATTCCTTCGCTCCTGATGGGATCTTGAAGCAAAATGAGTTATAATGACAGATAGGAAGCTCCCAACTTGTACCCGAGGTTATATCTTAATGCTGCTCTTTTGGCTGGCAAATGGGTACACCGTTCATTAAAATATAATTTTGGATCCCAACTGCAAACACTTTGTATAAATTTTTTTCAGGTGCGAACCATAAGTGAACATAGAATTACCGGGGGATTCGCACTTGAAATAGGGGAATACTTGTTTGGAAAAAGGAAAAGAAAAGTACGGGATATTGTATTTTTGTATGGAATTAACAAAAATGAAGTGGTAAAATAGAGTTAAATTATGTATAATTGCT # Right flank : TATTGAATTTAACGTTTTTATATAAAATCAGGAAAGAAATGGAGAATATGCAATGTACAGAGATCGTACAAAAGTTGTTTCTATAGGGGACAGGGTTATCGGCGGCGGTAATCCTGTTCTTATCCAGTCTATGACAAATACAAAAACAGAGGATATTAAGGGGACAGTTGCTCAGATTCGGGCCCTCACGGCGGCGGGGTGCGAGATCGTCAGGTGTACAGTACCTACTATGGAGGCGGCTCTGGCCCTAAGAGAGATTAAACAGCAGATTTCTGTCCCCCTAGTGGCAGATATACATTTTGACTACCGCATGGCTATAGCTGCTATTGAGAACGGGGCGGATAAGATTAGGATTAACCCGGGGAACATTGGCAGCAGAGAGCGTATCAAGGCCGTGGTGGATGCGGCAAAGGAGAGAAGCGTTCCTATCCGTGTGGGGGTAAACAGCGGTTCCCTGGAAAAGGAACTGGTGGAGCGGTATCACGGGGTGACAGCAGAGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTGCCTGCGAGGGCAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 23-1134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPW010000051.1 Lactonifactor longoviformis strain MSK.1.4 LPIFOOOC_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 23 33 100.0 35 ................................. TGGCGTAATGTAAGATTCACCGGAGGACTCAGAAA 91 33 100.0 33 ................................. TCAATTAATGGTGAGGAATGGGAAAATTTTGAG 157 33 100.0 33 ................................. AAAAAAGGAGGACCTATTGGCCCTCCGTATCCT 223 33 100.0 33 ................................. GGAGTATCGGCAAACGAATTAATGGGAATTAGT 289 33 100.0 34 ................................. TGTATCTCGCTATTTACATCCCTGTTTGTATCAT 356 33 100.0 35 ................................. AGGATGGTGTGCTCAACCGGTATTGCGATCATCTG 424 33 100.0 33 ................................. CCGCCATCTCGGTTATGATATTATCCTGGTAGC 490 33 100.0 35 ................................. TAGTTGTAGACGAGTGTCAAACTATGTTTAATTCT 558 33 100.0 35 ................................. CGATTATATGCAGAAATATTCTGAAGGTGTTTCTT 626 33 100.0 34 ................................. TGAAGAGTTAAGTGCTATGTATACAACATTGGTC 693 33 100.0 33 ................................. TCTTTTATCTATGTAAGGGCGCAAAGATGTCAA 759 33 100.0 35 ................................. TGCAAAGCATTTGCCCTCTGCCGGGCGCAGAAGGA 827 33 100.0 36 ................................. CACACAAGAGAATTACTGTTTGACATCTGGAGCATT 896 33 100.0 35 ................................. ACCATCATGTGATCATGAATGAGATAGGAGAGACA 964 33 100.0 33 ................................. TGGTGGATGATATTAAACTTGGGGTGATATTCG 1030 33 100.0 34 ................................. AGTTTTGAGGAGTAGCTGACATCTCCACAATATG 1097 33 87.9 0 ................AA..G.......A.... | GG,C,A,A [1111,1119,1123,1125] ========== ====== ====== ====== ================================= ==================================== ================== 17 33 99.3 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AATACAGGGATACAACATTGACG # Right flank : TCAGATTCGTTTTTAATTAATAGAGATTTAGTGCGAATGTCAAGTGCACAGAAATTTGCAGGGGGATTCGCACTAGAAAGTATGCTATATTGAATAGGCTATGAGGTATGGAGGAAGGATATACTTGCCATGGTTCGGTGAAATGTGTACAATGTGACTATATATATTGCAATTTTCAATGAGATAATTATGCATAATTGCAGTCGTTCCCTTCGCTGGGAACGTGGATTGAAATTCCATCAAAACGTGCCAGGGATGAAGTTGGTAAATGTCGTTCCCTTCGCTGGGAACGTGGATTGAAATCAGCCTTTGTTGATAAAAAAGGAAGAGAGTGGACGTCGTTCCCTTCGCTGGGAACGTGGATTGAAATTCACGTTACATCACACTTATATGCAGACGTTTTCGTCGTTCCCTTCGCTGGGAACGTGGATTGAAATCCTGGGGTTTACGGTAAACATGGGCGGCAGCAAGAAGGTCTTTCCCTTCGCTGGGAACGTGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1336-1774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPW010000051.1 Lactonifactor longoviformis strain MSK.1.4 LPIFOOOC_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1336 33 100.0 35 ................................. TCCATCAAAACGTGCCAGGGATGAAGTTGGTAAAT 1404 33 100.0 34 ................................. CAGCCTTTGTTGATAAAAAAGGAAGAGAGTGGAC 1471 33 100.0 34 ................................. TCACGTTACATCACACTTATATGCAGACGTTTTC 1538 33 100.0 37 ................................. CCTGGGGTTTACGGTAAACATGGGCGGCAGCAAGAAG 1608 33 97.0 34 ...T............................. GCTACTATTGCATTCATGATTCCTCGTAAGAACT 1675 33 97.0 34 ............A.................... CTGCCGCAATCAGTTCTGAGATGGCAAGGCTAGG 1742 33 97.0 0 ...............................T. | ========== ====== ====== ====== ================================= ===================================== ================== 7 33 98.7 35 GTCGTTCCCTTCGCTGGGAACGTGGATTGAAAT # Left flank : CGCGAGAGCCTTGTGGATTGAAATCACACAAGAGAATTACTGTTTGACATCTGGAGCATTGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATACCATCATGTGATCATGAATGAGATAGGAGAGACAGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATTGGTGGATGATATTAAACTTGGGGTGATATTCGGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATAGTTTTGAGGAGTAGCTGACATCTCCACAATATGGTCGAGGCTCGCGAGGGAAACTCGGTAGAGATTAAAATCAGATTCGTTTTTAATTAATAGAGATTTAGTGCGAATGTCAAGTGCACAGAAATTTGCAGGGGGATTCGCACTAGAAAGTATGCTATATTGAATAGGCTATGAGGTATGGAGGAAGGATATACTTGCCATGGTTCGGTGAAATGTGTACAATGTGACTATATATATTGCAATTTTCAATGAGATAATTATGCATAATTGCA # Right flank : TAGTAATAAATTTCCTGCTTATCTGCCGTAAAATAGAATTCTAAGGAGATAGTAAACATGATATTCGACTTTTACCCATGGAAAATGGATATTGATATTAAAGCTACGAAACAACTTTATGAGAGAAAAGACTACGCCAAAGATAGGAATGCCAATAAAACTATGTTTCAGGAGATGTCCGAAAAACAGAGAAATTTTTTTATATCCGTAGGTGTTGACATATTAAAAGCAAAAGTAATAGAAAAAGTTCATAATATTCCAAGTGATGGGGAATTGACTGGCGCGAAGATTTATAGTAGGACACTGGATTTTCTAATGTGTGGGAAGTTCCTTTCTATACCAGATTATCAGGAAGAAGTATACAGTGATGAAGAAATATTCGGTATGAATTTTTCTCATTCTTTACAAGTTATTTCTATGCCGGAGGAACAGAAAATTCCTGTATTCGATATTGATGGGTGGGGGTGTGTATTTAAGCATCCTTTATTTAGATTCGGGGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTTCGCTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 54799-56347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPW010000016.1 Lactonifactor longoviformis strain MSK.1.4 LPIFOOOC_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54799 32 100.0 34 ................................ ATATATGGCTACCGGGTGTCATAGCCCGGTGGCT 54865 32 100.0 34 ................................ TCCAAAGCAACCGAAATAAGACAGCGCTACTATC 54931 32 100.0 35 ................................ TTTTTGTGAAGTGATTGCCGGTGCAGCAACGTACG 54998 32 100.0 33 ................................ AACAAATTTTGGATGCTATTAACGGAACAAACG 55063 32 100.0 33 ................................ CGCAATGTGCTATTATAAGGCAAAGGGAGGCGA 55128 32 100.0 34 ................................ TTATGTCGTCGATAAAGTCATCCACTCCGTGACA 55194 32 100.0 33 ................................ TGGCGGATACCTTGCTGGTGTCATCCAGCATCA 55259 32 100.0 34 ................................ TGTATGCGGTATTTACCGTATCGCTGACCTGGGC 55325 32 100.0 35 ................................ CAGCCTTTGTTGATAAAAAAGGAAGAGAGTGGACC 55392 32 100.0 33 ................................ ACGCAAGGAAAAAATTAACTGCTCCACCGGAAA 55457 32 100.0 33 ................................ ACGCAAGGAAAAAATTAACTGCTCCACCGGAAA 55522 32 100.0 35 ................................ CACAGACAATTGCGCGAAAAGTATTGACCGGTTCG 55589 32 100.0 33 ................................ CTTTTCAAAATAGTCGAAATCATCAATCACAAG 55654 32 100.0 34 ................................ TAATATATCGGTATAAGTTAATCCGGTTTAATTC 55720 32 100.0 34 ................................ TTAAGGTTAGACGCCAGAGGGACAATCCGGTCCT 55786 32 100.0 33 ................................ GTTATAATTGGAAAAAATGTAACGCAAGGTTTG 55851 32 100.0 34 ................................ AAGAAGTTGGAATCAACGTGGTCGTGCTCAATGG 55917 32 100.0 34 ................................ ATTATATCTGGTGACGGTTACACCGTTGCAAGTG 55983 32 100.0 35 ................................ CATGACAGTGGATGGGCTATGAATACCAAAGGCTG 56050 32 100.0 34 ................................ TTATCCGGGCAAACAAGGATTTCATAGTATCCCC 56116 32 100.0 35 ................................ GATATAGACATTCAATGGTTGCTTACTGGAGTCTC 56183 32 100.0 35 ................................ CTTCCGAAACACGAAACAGTAGTACACCGCTTACT 56250 32 100.0 35 ................................ AGCCACATATGTCACACCGTCTATAATGACCTGGC 56317 31 81.2 0 .............C.....A.-..C...T.C. | ========== ====== ====== ====== ================================ =================================== ================== 24 32 99.2 34 GTCGCTCCCCATATGGGAGCGTGGATTGAAAT # Left flank : GAATACCCACCATTTTTTTGGAAGTAAGAGAGGTTTTATATGCTTGTCTTGATTACATATGATGTCAATACAGAAACAAATGCAGGTAAGGCTCGTTTAAGAAAGGTAGCAAAACAGTGCGTGAATTACGGAACTCGTGTGCAAAATTCAGTGTTTGAATGTATTTTGGATAACACCCAATGTGTTACATTAAAAGCAATCCTATCATAAATTATTGATGAAAATGTTGACAGCCTGCGGTTCTATTATCTGGGAAATAATTTTAAAAATAAGGTTGAACACATGGGTGTGGAACGCGGAGTTAATGTTGTTGATACATTAATATTCTAGTGCGAATGTAAAGTGAACATAAAAATGCCGGGGGATTCGCACCTGAAAAAGCAAGAGAATGTATAGTAAAAGTAGACAAAAAGGATGCCACATGATATGCTGAGAAGATAAAAGTGTATAGAATGTATATATGTTCCGTTGTGAATGCTGGTATTTTGTGCACTTTTGCT # Right flank : TTATCCATATATCCTACATACACTAATTTACAGTTGAAGATAAAACAATAAAATGATACCATAGACAAGTAACATTTTCTTCTTCAAAAAGAGAAGCTAGGATTCTGTACCTCTATAGTTGGAGAAGTGAGTCACCAAATGCATGAGCAAAGGCAGTTACCGGCGGATGGGAGTGGGTATTCCTTATTGATCAAAGGTCAATCCGCGCATCTATAAAATATTAGTCTGACGGTGCAAAATTGCCGAATTTGGATTGAAACAAGATAAATTGCAGCCACCTTTAGAAAAAGAGGAGACAATGATACAAAAAAAGATAAAAGACCTGGATCTGCAGCAGATTGCTCAATCGGGTCAATGCTTTCGTATGGAGAGACAGAACAGCAGTACATATTCAATCATCGCCCACGGTGAGTACCTGGAGATCACCCAGCACGGGGAAGATTATACGCTATCCTGCTCTGAAAAGGAGTTTCAGAAGCTGTGGCGGGAATATCTGGATT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA //