Array 1 7816730-7813703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080029.1 Streptomyces anulatus strain VUW1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================== ================== 7816729 37 89.2 37 ........T.......G..A.....G........... TCGCACCCCCCGTCGGCACGTGCAGCACGTACATCCC 7816655 37 86.5 37 ........T.......G..A.....G.......T... CACGGCATCGGCACCGTGCTGGTGTCCCTGCACACCG 7816581 37 89.2 37 ................GA...A...G........... ATCGCCACCGATCCGGGGTTCTACGCCGACGAGGAGA 7816507 37 89.2 36 ..........C.......A...G..G........... GCGGCGTCGTACCAGCGGATCCCGCGGGTTGTTGTC 7816434 36 94.6 38 .............-...........G........... AGCTTCCGCCGCTTCTCACCCGACGGCCCGTGCACGCT 7816360 37 91.9 37 ................G..C.....G........... TCCGCGTACCGCAGCTCGGCCTGCCGGGCCTCGGACA 7816286 37 100.0 36 ..................................... TGCGGTCCCTGCTCGGCGAGACGGTGCACCGGAGTG 7816213 37 86.5 35 .........AC...T.G........G........... TCCGACCGGCTTGCCGAAATGACGGCGCTCAGCGG 7816141 37 89.2 37 ...............TG..C.....G........... ATCTGGGCGGGGGCGGCACCGAGGATCGCGATGTACG 7816067 37 91.9 37 ..............T.G........G........... TTCAGCCAGTCCGGGCCCCGCCCGCACAGCTCGGCGA 7815993 37 97.3 37 ................G.................... TGCTCAGCGTTCTTCCGGGACAGCTCGGCGCGCTCGG 7815919 37 78.4 38 ......C...CT..T.G........G...G.A..... GACTGGCAGGACGCTTTCGAGCGCGAGGCCGAGCGGGT 7815844 37 81.1 35 .......G..C...T..A..T..T.G........... GGGTGGTTGGTGGCCGCCCCGGGTGGCACGGCCAC 7815772 37 89.2 37 ..........C......A.......GG.......... GGCCTGATCCAGCTCGTGGAACGGCCCCGCCGATGAC 7815698 37 89.2 37 ................G..A.....G..A........ GTCGCGACTGCCGGGAGCAGTCAGTCACGACCAGGAC 7815624 37 81.1 127 .....AA...C...G.G.....G..G........... TCTGCTTCTTGGACTCGACGGCAGAGTGGCCGCGATCGGCGCATCGGCCAAACCCACCTCACCGTGAAAACCTCGTACGCTGACGAGCACGCGGGTTCCCGTCCGCTTCGGAACCGGAAGCACACAC 7815459 37 51.4 70 .C.A.ACG..GA.CG..CC.AAG....T.CC..A... CACCGGAATTGTCACCTCCAACGCTCTCCCTCTATGAAGAGCGCTAAGCTATTTGCACTGCTCAGACAGG G [7815433] 7815351 37 91.9 35 ..........C.....G........G........... GCGTGCGTCCCGATCACCGCCGCCTCCGGGCGGGA 7815279 37 89.2 35 ..........C.....G..A.....G........... GGGACGACCGTGCTGCGCATGGTCTCGGCACGGTA 7815207 37 86.5 36 ........T.......G..A....TG........... CAGGTGACCAGGCTGTCAACGCCCCGGAAACCGGCC 7815134 37 86.5 38 ........T.......G..A..G..G........... CCGCTCGGGGTCGACGGACTGATCATCGCCCTGTACAC 7815059 37 83.8 37 ........T.......G..A.A...G..A........ TCCGCGTACCGCAGCTCGGCCTGCCGGGCCTCGGACA 7814985 37 100.0 36 ..................................... TCCCACTGGTAGCGCTGCTGCGGCTCACGCAGAATT 7814912 37 94.6 38 ................G...........C........ GATCTCGTGCTGACGCTGCCCGGCCTCGTACCCCTCGG 7814837 37 83.8 38 .........ACTT...G.....G.............. GAGAAGAAGGAGACCGGCGAGGATCGGATCTTCGCCGC 7814762 37 83.8 37 .C........C.....GA..T....G........... GGGAGTACGCGCCGATGGTCCGGTGTGTCGTCGCCCG 7814687 36 83.8 35 ..........C...G.....-AG..G........... GAGGCCTGGGTGCTGCTCTTCGTACGGACCACACG 7814616 37 86.5 35 ........A.C...T.G......T............. ACCCGCGTTACCCCTGGCAAAGCAGGTACCGTGCG 7814544 37 75.7 36 ..........CT.CT.G...T...TGC.......... GACTGGGAGCGCGACGGCAAGAAGGACGTCGCCGGC 7814471 36 73.0 36 ...C.A...CC...G.G.....-.TG...G....... ACCGCCCTGAGCAACGCCCTGGGCTGGATGGCAAAC 7814399 37 81.1 36 ........ACC.....G..AG....G........... GTATACGTCTCGCCGGGGGTGAGTGGCTGCCCAGTC 7814326 37 86.5 37 C....A....C..............G...C....... GTCGCGGCCGGCCGCCGCGTCGGCCAGGCCGCCGGGA 7814252 37 91.9 38 ..........C...T..........G........... CGCCGGATGGACCGCGCGAACGCCCCACCGGCATCGGC 7814177 37 86.5 38 ..........C...T.G...T....G........... GGCCGCAACCGGACCGGCAACGCGGTCAACCTGGCACG 7814102 37 75.7 36 ...CT...........G..CA.G..G.........GG ACAGGTGTGTGTGAAACAGCGGGCCAGGCAGTCTCG 7814029 37 89.2 37 ..........C.......A...G..G........... ATCGTCCAGACCCGCGGCAACCTCAACGACCGGCGGG 7813955 36 89.2 35 ..........CT....-........G........... TTTCAGGCGTCGCCGGAGCTGATCGAGCTGATGGC 7813884 37 83.8 36 ..........C....GT...T....G...G....... GTCAGAGTCGGCACCGGGATGAGCGGGCGTCGGGCC 7813811 37 86.5 35 ..........C..C..G..A.....G........... CAGTTGGATTCCGCCTCGATCTGCGCAGCGATCAG 7813739 37 78.4 0 ..........C..AT.G...T.G.T.....G...... | ========== ====== ====== ====== ===================================== =============================================================================================================================== ================== 40 37 86.1 40 GTGGCGGTCGTCCTCCAGGGCGACCAAGGATCGCAAC # Left flank : TCGGGGGCAGGAGGTTGCGATCCTCGGCCGCCCGGGAGGGCGACCGCCACCTCGCCAGCGGGGAAGCGAAGTCCCCCACCCCGTTGCGATCCTCGGCCACCCCGGAGGACGACCGCCACCTGCAGCCAGCCCTCGGGCAGCTCGACCGACCCGGTGTTGCGATTCTCGGTTACCCCGGAGAACGACCGCCACGCCTGGGCCACCAGCGGCGGCACCTCGGCATACCCGTTGCGATCCTCGGTCACCCGCGGGGGCGACCGTCACTCACTATTCCTGGATCGGCGCATCGGCCAAACCCACCTCACCGTGAAGACCTCGTACGCTGACGAGCACGGGGTTTCACGTCCACGGTCACATGGCATTCCCGTCCGCTTCGGAACCGGAAGCACACACGCGACACGCGGACCGCACCGAAGCCAGATGCCCGAAACCACCGCAATTATCACCTCCAGCGCGCTCCCTCTATGAACAACGCTAGGCTATTTGCACTGCTCAGGCAG # Right flank : CACGAGGGGGCCGTCTGGATGGTTAAGAGGTCGTCTCAGTTGGTGAGGCGGCGGTGGCAGATGAGGGCTGCGGCTATGCCGACGAAGGCAAGGAAGTGGTCGGACTTGCGTTCATATCGGCGATGGAGGCGTCGGCAGCCGGCCAGCCAGGACACGGTCCTTTCGACCACCCATCGGTGTCGGCCGAGCCACTGTGAGGACTCGATGCCCTTGCGAGCGATGCGGTGACGGATGCCGCGCTCACGAAGCCAGCGGCGCAGGTGGTCATAGTCGTAGCCCTTGTCGGCATGGAGCTTGCCGGGCCGTCGGCGGCGCGGGCCGCGAGGGGAGCGGATGGGCGGGATGCCGCGCACGAGTGGCTCAAGGCCCTGGCTGTCGTGCATGTTGGCACCGGAGATGCCGAGCGACAGCGGCAGTCCGTTCCGGTCGGTGATCAGATGGATCTTCGACCCCAACTTGCCACGATCGGTCGGATTCGGTCCGGTCAGTGGCCCCCCTTT # Questionable array : NO Score: 4.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTCCAGGGCGACCAAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-14.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [89-68] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 7842835-7842562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080029.1 Streptomyces anulatus strain VUW1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7842834 29 86.2 32 ...........G.....AG......C... GTCCCGACGTCCGTCATCGTGACGGTCCTCAA 7842773 29 82.8 32 ......G.G..G......G......C... CGCAGGATCCCGGTGAGGGCGGGCCCGACACC 7842712 29 82.8 32 ......T....G.GT...G.......... GCCCGCTCGTAGCCGACGATCGCGAAGTCATC 7842651 29 100.0 32 ............................. GGCAGGCCTGTGGCTCGACGGACAGCCCGTCA 7842590 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 89.7 32 CTGCTCCCCGCACCCGCGAGGATGGTCCC # Left flank : AAGTCGGCGAGGACGCTTCCGCTGGCGGCCGGGGCGGCCATGCCGCGCTCGGCCATCATCATGCTGATCGCGCTGCCCAGCCCGAGCGGCTCACGGCCGTCGCGCCGTACGGCGGAGGTGGTGCGCCGCTTCGGCTTCTGCCGGGTGACACCGCTCTTCTTCGCCGCTTCCCGGGCTGCGAGCGGGGCCTGGCGTGCGAGGTCGACGCCGCTCAGTTCCGACTCGGTGGTCATGCGATCACCGCCCCGGCCGTGTCGGTGTGCAGCGGGCGGGCGGCGAGTTCGGGCAGCCGGTCCGTCCACGGAATGGCCGGGGCCTGGGACCATCCCCGCGGGTGCGGGGATGATCCTCGCCCTCGTTCACCGTGGTGTCGATGGTGATCTGCTCCTTGCGCGGCAGGGACCCCGACGAGTGGATCGGGCAACATGGGTTCAGTGATTACTCCTTCGCGAACATGAGGATGGCCCCGGTCCGTCGCCATCGACACCTGGAGGCCGTCG # Right flank : GCGAAGGGGAACGTCCCGGACGCCGTGCACTGCGGCGGGCAGGGCTCGAATTCCCGGGGCTCCGGCTACTCGATGAGTTCCTGGTAATAGGCGGGGAGGCCACTCACGTCCTCCCAGACAATCGACAGAGCCAGCAACGCCCGCGCCAGCGACTTTATCGTGACGCGGTCAGCAAGGAAGACGACAATCAGCTCCTCATCCACCACGGCGGCAAGAACCTCGTCTGCCGTTGCCCCCGACCAAGCAGGCGCATCGACCAGCTGCACGGTTGCGGCGAGCTCACCGCCTGGCCCCCACGACCTTCCTCGTCGTTTCTGAAGTCAGTCCTGATGACGAGAACGCCAACAAGTCGCTCCGATCTCAGGCAGCACTCGCTCAAGGTTCTCCGGCAACGTCATGCCCAGGACTCTCCCACCCCGCACCGACAACCAGCCCCTGCGGGAATGATCCAGAAGAAGCGGCCTAGCCCTTCTGCTGCGGTACGTTTCGGCTCCGGTCGG # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGAGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 7853193-7851997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080029.1 Streptomyces anulatus strain VUW1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7853192 29 100.0 32 ............................. GAAATCACGGACGACACCGTGGGGCTGACGGC 7853131 29 100.0 32 ............................. GCCAACACCTACCGCGCGCTGTACAAGTACGC 7853070 29 100.0 32 ............................. GAGCGGCGCGACAGGTTGGGCAAGGACCACGT 7853009 29 100.0 32 ............................. GGTCCTAGAGTAGGTGCCCTCGGCAGCACTTG 7852948 29 100.0 32 ............................. TCCCCGAAGGCTCAGACCGCCGCGACCGCCCT 7852887 29 100.0 32 ............................. TGCCGCTCCCGGTCCGGGCTGCGGGCGGCGAC 7852826 29 100.0 32 ............................. TCGGCCGTGGGGTGGTGTTCTTGCCTTCCGGT 7852765 29 100.0 32 ............................. ATGGACGGGCCTGCGGACAGCTTGGCGGTAAT 7852704 29 100.0 32 ............................. GAGACCGGTACCGAACGCCAGTGACCTCACCG 7852643 29 100.0 32 ............................. CACCAGGACCAGGGGGTGTGGGGCGGGCTCAC 7852582 29 100.0 32 ............................. TCCCCGCACGGGGCCGACTACGCAGTTCCGGC 7852521 29 100.0 32 ............................. GCCGCGGCCCGGGACCTCGGCCCCCGGCCGGT 7852460 29 100.0 32 ............................. CGGCACGTCACCCTCCGATCTTCAGCGTGACG 7852399 29 96.6 32 ........T.................... CCGGTGATCCACAGATTCCCCGACGAGGCCAC 7852338 29 100.0 32 ............................. TACGACCAGGTCCACGCCATGGCCAACGCGAT 7852277 29 100.0 32 ............................. CTCACCCACCCCCGCCGCTGACCTGACCGAGG 7852216 29 100.0 32 ............................. CTTGGCCTCTTCCACGGCTGACTCCCTCATTC 7852155 29 100.0 34 ............................. CTCGTCTCCGGTGAGGCCACCCCCCTGACCACAC 7852092 29 89.7 38 .......A.....C.............T. GTCTGCAACAGCCCGGCCTCGGCGAGGGCGACGGGCGG 7852025 29 89.7 0 ...........G..T....C......... | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.8 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ATCGAGACAGCCCGCCGCACAGCACTTGGCGGTGCTCTGCCCGTCGAGCTGGAAACGCGGGACGTCACGGCGGACGTGATGCGGGACGCCGAACCGCGCCAGGGGCACGGGGCCGGCCGCGGCCGGGGCGCCGCGTGACCTACCGGCTCCACTTCCCCGGGGACGTGTTCGACACGTACAAGCAGCTGCCCGAGCTTGCCCGGCGGGATCTCGCGCTCGCCCTGGTCGACGCCCAGGAAGACCCCCTGGCGAGCTCCGAACCGTACGGACAGGACGACGGCATCACCCGCACCGTCGCCCAGGGACACGTCACCGCCGTGCTCCTCCTCGGCCACGACACGAGGACCATCACCGTCCTCACCATCGCCTACGCCGGAACCACCTGACCTGCGGTCAGTGACACAGCGAAGGCTCAAGGTTGAGGAATGGTTGATTTGTCGGAATCAGTGAAAGTGCTCGAGAATCGCACCCACTCCTTGTAAAGCTGCAGGTCAAGAAGT # Right flank : CGGTGGTACTCGGGCTCGAAGCGGACGGTCGCGCTGCCGGTGTCCTGCCAGCCGTGGACAGCGATCAGGTCGACTTCGCCGCGCCGCTGCGGAACGGCCCCGTTCCGGTCGGGACGGTGCAGGAGTACCGCACTGCGAGCCCCCGCCACGGGGCCCTCCAGCGAGCTGAGGTCCGATAGCGCGGGCGGATCGGTCTCGGGGGTGCCATCGTCCGGTGTCAGGTGGGCCGTCACCAGGACGGCGACGTCGCGTTCGCGGGCGAGCTGTTGCAGCACCGCGAAGGTCGCCCCCTCGGAGGGTTCGCCGTAGGCGGCCTGGCTGTACCCGTCCACGACGACGAGGTCGAGCTCCGGCTGGGCGGCCAGCTGCTCCATCAGAAGCGCGAAGGCCCACTTCCCGGGTTTTCCCGCGCGGCTCCAAAGCAGCAGACGGGACTGCCCGCTGTTGATGATGCGGGTCTGAAGAGGGGCGGGTCGCGTACCTCGTACGGGCGATCCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7855915-7854255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080029.1 Streptomyces anulatus strain VUW1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================= ================== 7855914 29 96.6 32 ..............T.............. ACGGTGCAGCGGGTTCTGGATACGGCGAAGGA 7855853 29 72.4 32 .........A.G.A.AT.C......C..T GTGAGCAAGGCTCGACTGTGCTAACTGCCCCC 7855792 29 89.7 33 ........T....GT.............. GGCATTCTGGGAATGTCCCGGGTGGATCAAATC 7855730 29 86.2 32 .........C.G...AT............ TTCCAGGCGTACGTCACCACGGTCACGCACAT G [7855709] 7855668 29 89.7 32 ...........G......A.........G ACGGCGCTGGCCGGCACCGACGGCATGCCCGA 7855607 29 93.1 32 ..A..A....................... AACCTCAACCCGGAGCGCGACGAGACCGACCG 7855546 29 89.7 32 ..C..........G...A........... AGCTCCGCGATCTTCGCGGCCACAACCGGGGC 7855485 28 82.8 32 T..........G.GT.....-........ CCGCAGTACGTCCAGTGCTCCGCGTGCAGGAC 7855425 29 100.0 32 ............................. AGCGGAAGCAGATCCCGCTCTTCTTGTGGCAA 7855364 29 93.1 177 ...T........T................ CGTGGTGTCTCAGCAGGGACGGCGGCCCACCTCTCCCTGGCGGGACCAGAACTGTTCGCCGGGTGCTGGGGATAGCCTTGTCGTCACGGCAGGAGAGAGCTGATGGTTGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCTTTCCCGCTGTAACGCTGCAGGTCAGGAAGA 7855158 29 96.6 32 .........................C... ATGGTTGACCCGTCGGTACCCAGCGCAGAGAG 7855097 29 93.1 33 .........................C..G GGGGCCCACGTACGGGGCCACCTTCCCGATAAT 7855035 29 93.1 32 ........G.....T.............. TCATCATCAAGATCATCGGAGAGGGGCAGTCG 7854974 29 89.7 32 ...........G.GT.............. AACAGATAGGCCCACCGGGCGGCGCGTCGTTC 7854913 29 96.6 32 .................A........... CACAAGGGCTCGTGGGGGCCCGTTCATGGGTT 7854852 29 96.6 32 ................T............ TCGACCCTGGTCACCGGCGGGGCCGGGGCGGT 7854791 29 96.6 32 ................T............ TCGACCCTGGTCACCGGCGGGGCCGGGGCGGT 7854730 29 93.1 32 ..........T.....T............ TTCGAGACGTGCCGGTGCACGGGCGGCGTCGC 7854669 29 93.1 52 ............TT............... GACGGCAGGCGGCGAGAGGGGTGGGGTCGCGTCTGCTCCCCGCGCGTGCGGG 7854588 29 82.8 32 .........A.G.A..T........C... GACGGGTACATCGACGGGTTGAAGCCGAAGAA 7854527 29 93.1 33 .........................CT.. ATCAGGTTTCTCCACGAAACCGAAGCCCTTTTA 7854465 29 96.6 32 ..................A.......... GCCCAAGTGGGAGGTTCAGGTCGTCGCCTCCC 7854404 29 100.0 32 ............................. CACGACGGCCGACAGCCGAGCTTCTCGGCGGC 7854343 29 86.2 31 .................A......CC..A GGGCGTCCAGGCCACCCGTCTCGGCGTCACT 7854283 29 79.3 0 ...T......G..A.AT.......A.... | ========== ====== ====== ====== ============================= ================================================================================================================================================================================= ================== 25 29 91.2 39 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCAGAAAGACTTCCTCCTGAACACCATGGCGATCCCCGCCCACTGGTTCAACGGAAGAAACGCACTACCCCACCCCGAGGAATGGCCACCGGTCCGCGCCGCCCCAGCGCTGAAGAGGACCCGCACAGCTCTGTTGGACCCCGCCAGTGGCACGTGCGTCAGCGGACCGCTCGGCCTTACCCTCTTCCCCGACTCAGGACTGTCCAAGTGACCACACCACTGGATCCGCAGCCCAGCAGCTATCGTGGCTCACCTCCCGGTCAACCGGGAAATAGGCCAAGAGTTTGTGCATTCTGGCCTTACTCCCCACACCCGTGGGGATACCTTGCTGCCCGCGCTCGCGCGGGCGGCAAAACCCTTCACCATGCCGCACATTACTTACGGCTAAGCCAGCCGCCCGGAGGGCGCCCGCTCACAGAAAGGCGCCCCACACAGCGAGGATGTCCGTTGTGCGAGTGACATCCAGCTACTCCCTGCACGCGGGTATCGGTGACAATCAA # Right flank : CAGTCGCGGCGTGGGAGCGGCTGTTTCGGCTTCTGTTCTGTGTGGCGCTGGGTTTCGTGCGACGCTCGGACATCCTCGCGTTTTGGCGGGGTACGCGGATGGCCTACCGCTCCGAGGAGGAATCATGGCCGGACTGATCGCCCGTTTCACGCAGTTCACTCGCAGCCCTCAAGGGCGGCGGACCATTGCGTCGGCCAGGCGTGCCGCGGCCGACCCGCGTAAGCGCGCCCAGGCTCGCAGCCTGTTCGGCCGGCTGCGTGGACGCCGGTGACATCGGTGCTTCGGCGGACGATCGGAGGCACTTGCTGACGTTGCTCATCGGAGTCCGAGATGCGGGGCCTTGGGTGGAAGTCGAGCGCTACTCTGGGCATCCGGCGTGTTGGAGGAGAGGCATATGGCGAACGAGGACTGGACAGTGGACCGGCTGCACGTCGCCCTGCCCCACTCGGCTTCCCGGCAGCAGCTGCTCCAGGACGTGAACCTCACACCGCTCGAAGAGC # Questionable array : NO Score: 4.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.57, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [22-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //