Array 1 306027-306357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOG01000003.1 Pectobacterium odoriferum strain NCPPB 3839 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 306027 27 89.3 32 T.........-...C............. ATCTTTCTGAGTTAGGCCTTTTCTGGCTTTTA TA,G,G [306030,306033,306043] 306090 28 100.0 32 ............................ TCTTGAGATTTAGGGTCGTAGTCAGATGCACT 306150 28 100.0 32 ............................ TGTAATAGCGCATAAAAACTCCGCACCTCTTG 306210 28 100.0 32 ............................ AATCAGAGCCAGAACATCGGAGACAGCATCCC 306270 28 100.0 32 ............................ TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 306330 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATGCCCGCGCACCTGAAAGGCAGCCTGCTCGGAAACAGCCTGACGATCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAGCTCCCCGAAATGCGTCGCGCCAGCGACGCATCCCGATAAGCCTCGAACTGTCTGTACGGCAGTGAACCCCTTCCATTCCGCCGATAGTTGACATTTGCATTTCTAAGCTGCCTATGCGGCAGTGAACATTTAATTGCGTCGAAACCTGAGCTACCCATATTTCTAAGCTGCCTATGCGGCAGTGAACACGCAAGCACAGGGCGTATACCTGCAAGGTCATTTCTAAGCTGCCTATGCGGCAGTGAACTGCTGTCAGTAAAAGTCTTGCAAATTTGTTCATTTTCTAAGCTGCCTATACGGCAGTGAACGGATCGACTGCGGATGCCGCCGCGTTATCAAC # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACTCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGTTT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 314497-313689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOG01000003.1 Pectobacterium odoriferum strain NCPPB 3839 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 314496 28 100.0 32 ............................ ACTGATTGATAGTTGGCGGTGAGAGGCCAAGA 314436 28 100.0 32 ............................ ACCGATTGAAGGCGGTGATATCTACACCGTCC 314376 28 100.0 32 ............................ TGCAATGGCACCAGAATTAGTGCGCTGCACAC 314316 28 100.0 32 ............................ CACATCTCGCGGGCTTTATCTGATCCGATTTC 314256 28 100.0 32 ............................ TGAGTACAGGTGCACGATGGGGCGAGGCCAGC 314196 28 100.0 32 ............................ GCAGAGGTTATCGAGCTGCTGCGCAAAGAGTC 314136 28 100.0 32 ............................ AGCAGGTGCGGGTAACGTCTCTGTCGTCGCAC 314076 28 100.0 32 ............................ AAAGAACGATGACTATTCCAATTACTCAATCC 314016 28 100.0 32 ............................ GCTGGTCCGCGTCGAACTGATTCTGCAGCAGA 313956 28 100.0 32 ............................ TATCCCGTAATCACAGCAGCAGGCTTTTACGT 313896 28 100.0 32 ............................ TGCGGCGGTTATATCTTTCATGGTGCAGCAGG 313836 28 100.0 32 ............................ TGCGGCGGTTATATCTTTCATGGTGCAGCAGG 313776 28 100.0 32 ............................ GGTAGGTGAGGTTGCGCGGCAAGTTGGCGTCA 313716 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //