Array 1 28201-24956 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACQ01000015.1 Lacticaseibacillus zeae DSM 20178 = KCTC 3804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 28200 32 100.0 37 ................................ CATCATAGTTGAGCGTTTCTCCTGCGTCATAAGTTGC 28131 32 100.0 34 ................................ CTTGGCCTTTAACGTCCACTGAAACAGTGACTGT 28065 32 100.0 34 ................................ GGTTTTCTTTCCCCACAAATAATCGTGTAGGTTG 27999 32 100.0 36 ................................ GTCCTCCTCTGGTTGAGACACTGCTATTTGCTCCAT 27931 32 100.0 34 ................................ CTCTTGATAGTCACGCAGCTTAAACTTACCTTTT 27865 32 100.0 35 ................................ CCTTACTTTTTAGGCTTTGAAGATACCGATGTATT 27798 32 100.0 38 ................................ TTGTATCGAGATTACGCACGTGAGAAGATATAGCTAAC 27728 32 100.0 36 ................................ ATTCAATTGATAAAGCATCTTGCGCCGCTTAATTTC 27660 32 100.0 35 ................................ TCATACGACACAATCATGGGGCGCTCACCGCTGTT 27593 32 100.0 35 ................................ ATAATCAATACCATTAAGATAAGCATTGTTTTTCA 27526 32 100.0 37 ................................ ACTAAGGGTCGCTTAAACCGGCGCGTTAACTATGCAG 27457 32 100.0 34 ................................ TGGATTAGTTATACGGCCAGATGGTATCTATAAC 27391 32 100.0 35 ................................ CAATTGATGGCGAAACCTTAGCAAACAAAATAAAA 27324 32 100.0 35 ................................ TGGTGAACTTGGTGGTGTCCGATTCACCACAGCGG 27257 32 100.0 35 ................................ CTAATTCTGACGTCCAAATTAACTATTTACCAGGC 27190 32 96.9 36 .................C.............. AGTGACTTGTTTCTTCCCCCACGCAAGCGGCGTCCC 27122 32 100.0 35 ................................ ATTCAGATTGGTAATGGAAGACTTATAGCCTTCCA 27055 32 100.0 36 ................................ GAAGCGCCAAAACTAGAAACGGCCTTGCGGAATGGG 26987 32 100.0 36 ................................ CAGTAAGATATTCGCATGAAAATACTATCAGTATCG 26919 32 100.0 34 ................................ TAACGGTCGTTGCTCGTTTGGTTTGGCGTGACGG 26853 32 100.0 34 ................................ TAACAACCAGCAAAGTAGACCAGTTGGCCGTTTG 26787 32 100.0 35 ................................ AACATCGACATAAGCCGGCAAAACCTGACCAGCAA 26720 32 100.0 34 ................................ AAGATTCATGCTGATGTTGCTTCGGGTACAAATC 26654 32 100.0 34 ................................ CCGATAACGCTGACGATAAAACAGTAACATGGAA 26588 32 100.0 36 ................................ TTACCATTTACATGTAGGTATTACTAAAATGGACTT 26520 32 100.0 34 ................................ CAACACAGACGGGTCAAAACGTGTGCTATTGGTG 26454 32 96.9 34 ........................T....... CATAAAAGACGCGGTTAACTTGTGTATCGGCAAG 26388 32 100.0 36 ................................ ATAGATGGTTTTAGTTTTATAGTTACGCGTTTCCGT 26320 32 100.0 38 ................................ AGGACCTCTTCAAGAGCAAATGAAGAAAAACGGGGCTT 26250 32 100.0 35 ................................ GTGGAATCCAAAGCTGACTAAGGACGTTGAGATCG 26183 32 100.0 34 ................................ CTATCACGGGTATGCTGATGTTTGGACGTCAAGC 26117 32 100.0 34 ................................ ATTGCCCCAAAAGTGTCGTACAAAGGTCTGGCAA 26051 32 100.0 36 ................................ AAATTCTCAACGACCGCACCCGCCCGCGCAGCTTTT 25983 32 100.0 34 ................................ ATATGGATTGTGCACTACGATACCAGCCTCCTCA 25917 32 100.0 34 ................................ AAGTTTTCAAGGTATCGGGAAGACAATAGGCGAA 25851 32 100.0 34 ................................ TAGGTGGTGGGTTGATGCCTGGGCGTTTGCTAAC 25785 32 100.0 33 ................................ CGCTGAAACTTATGCACGGCGTTACTCCTTGTC 25720 32 100.0 34 ................................ TTCTGCCAGTAGACTGAGAATCGCATACCGCTTT 25654 32 100.0 33 ................................ TTTTTTATTGCGGCTAGTCGCTTGTTTAATGCC 25589 32 100.0 35 ................................ TTTTTGTGCAGAATTCAGACGCGACTGAAATAACA 25522 32 100.0 36 ................................ TGGAAAAATAATGAAATGCCTAACCCATTTATGCAA 25454 32 100.0 35 ................................ TTTCCTTTTTGGCCTTTTCCACGGTCTCACCTCCT 25387 32 100.0 35 ................................ TTGTTGCCAAAAACATTGTAGTAACGCTTGGCCGG 25320 32 100.0 34 ................................ TAATAAGGGTATTAAGGAATCTACTGAGGAGAAC 25254 32 100.0 34 ................................ TTGAATGTCATTATATGCTTTTACGCCGATGAGA 25188 32 100.0 35 ................................ TTGTTGGCGATAGCCTCAAGACTGTCAGCCACGTT 25121 32 100.0 35 ................................ GCAAGGGTTTAGCGGTGCAGGCCATTAGCAACAAG 25054 32 96.9 35 ...............G................ GAAAAGACTAGCACGGCGCTCGGTAAGGTTAATGC 24987 32 84.4 0 ....T......T..........T.T.....T. | ========== ====== ====== ====== ================================ ====================================== ================== 49 32 99.5 35 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGTTTCGATGAGCATACGGGATTATGGATAGCCAGAGAAAGTCAATATGACGAAGATTTTGGATTGGATACAACGGACAAGGCCATGAACTATTTTGTATAATTAACAATCTTAAGTTGAAATTTAGATAACTTGATTTGTTGTCGAAGTTTCAAGGACAGGGTAATCTGAAGTGAGCGGTATTCAGTTGAATTGAAAACTGCTTTCTGGTGACAAGATGATTTCTAGCATCACTTTTTGTAATGCCTTCCCTTGGTGCGAATGGTGGGTAAACATATAAACCCGGGGAGATTCGCACCAGATTTATATCTGAAAGTACCGTGTTGACGTTTTATCTAGACTTTTTGATGTGTATAGTTAAGCACCAGCCGCAAGATGTTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : TCTTATGATCTTAAGGTTGGTGGAGCACAATTTTTAGTCCACATGGCTACATGAATTACAACTCGCGACTGTCTGAACCAAAACAACGTTGCAGTTAGGCGTTTTGATAACTACCTGCAGCGTAGTCCTCGTAATTGAGTGCCTCGAGAATAACAACAATACTCAATAACGGTGATTTTAAAAATGGCCTCTTCCAATAACAGGGAAAACGCCATTTTATTATATTGAACATTGAATTACATATCGACCATGATTAACATCTGTAAATCAACAATCTCACAGGAAAATACGCCGTTCATTCGTGCACTTTGACAGTTTGATGATCTTGAAAATATGCGTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAGCCATCGTTTGCCTCAACGACTAAAGTACGATTATCTGCTGTAACACCAATATCAATGGAACACGTGTTTGGTGCTTCTTTCCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.30,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 37116-39678 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACQ01000015.1 Lacticaseibacillus zeae DSM 20178 = KCTC 3804, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 37116 32 100.0 35 ................................ TAATACACAAACTAGCAATAACAATATATCACCAG 37183 32 100.0 34 ................................ CTATAAGCATGGCCTTTTTAGCGTCCGGTATGCT 37249 32 100.0 34 ................................ CCAGTAGGTTACTACCACTACGAGCAACGGCTAA 37315 32 100.0 33 ................................ GCTCATTCTCTCGTGATACAGGACTTGTCGATG 37380 32 100.0 36 ................................ TTAATAGGCCTAAACAGTCTAACAAATGACTTTAGC 37448 32 100.0 33 ................................ ATCCGGCAACAAGTACGCCAGCAACTAATGCAG 37513 32 100.0 33 ................................ TGGAATATTCAAATCCCCCTGTGGGTATAGTCA 37578 32 100.0 34 ................................ CACTTGGAATAAGATCTGGACACCAATTACAAAG 37644 32 100.0 34 ................................ TGTATCTGACCAAGAGAAGATTACTAAGGCTGGT 37710 32 100.0 35 ................................ TTACCAGTTGGAAAGGCACTCATGTTTGTGCCCTT 37777 32 100.0 35 ................................ GGATCAACAACAGTCTGAATAACCGACTTGCTCGT 37844 32 100.0 36 ................................ TCATCCGTATAACCGCCCTTGCTATCACTGACAAAC 37912 32 100.0 34 ................................ ACCTTAAGCCGATGTTGATTAACATAATCAACTA 37978 32 100.0 33 ................................ TGTGGCGTATCGGCCATGCCGGCAATGCTGGAA 38043 32 100.0 33 ................................ GTTAACCGACCACTGTTTATTAGTGTCGTAAAC 38108 32 100.0 35 ................................ GCTTTGGCGTTGGTCTTAATAAAGCTTGCGCCGTC 38175 32 100.0 36 ................................ TGCTGTGAATGACGAATCAGCATGTAGTACGCCCCT 38243 32 100.0 33 ................................ CGGCAAGGGTTGCCGTCATATAATAACGGCCGG 38308 32 100.0 34 ................................ TACGACTGATGGCGCGGTTGTCAAGCTCGCGGGC 38374 32 100.0 35 ................................ AGCCGGAAATGAACGAGAAGAAGGCGAGGGAGGAC 38441 32 100.0 34 ................................ GCGCTGGTGGGCTGTCTGTGCCTTAGATAACTTA 38507 32 100.0 35 ................................ CGCAATTTTATTTTGCTTAGCCGTTTTTAGCTGTT 38574 32 100.0 36 ................................ ATGTGTTAACCCCCTGATTAATCATAAATTTCATAA 38642 32 100.0 33 ................................ TTATTGTGCAAGCGCACGCAATGACAATATTTC 38707 32 100.0 36 ................................ ATTACCTCTTTTAACGGACGCCCTAAAACCCCGGAA 38775 32 100.0 35 ................................ TTCGTATTTAAATAAGTTTAAATAAATCTTGTTTT 38842 32 100.0 35 ................................ TCAAGATATGGGCTTGAATATTGATATGAGTGGTC 38909 32 100.0 34 ................................ TCCGAAGATAACCATTTCTGGTACATATCCTCGT 38975 32 100.0 34 ................................ CCCGTTAGGGTAATGGATATGCAAACGCATAAGC 39041 32 100.0 36 ................................ AATAACAGCATTCAGAATCGCGTTTGAATCTGCACC 39109 32 100.0 35 ................................ AATCTCACTTACCTCCACTCTCGGATTGACTTTGT 39176 32 100.0 35 ................................ ATAGTCGCCGGCGCGGAACCGATTATTACTAAACT 39243 32 96.9 34 .........C...................... ACATCTTCTTAATGAGTTGATTGAATTTTGCTTT 39309 32 100.0 34 ................................ TCCCGGCCTTAGCACCGCCGTGTAATAACCACGA 39375 32 96.9 37 ......C......................... CAGGAACTTGTGCTTAACGTTGTCGTAAATGGATCGC 39444 32 100.0 36 ................................ AAATTGAGCCATTGACCGCCCTTGCGTGTGCTCACC 39512 32 100.0 36 ................................ ACTCCAAAATACCTGTCTGGTCTCGTTGGTGTCTGC 39580 32 100.0 35 ................................ CGCAACTAAAGGCACATCTGCGGATGGGCAAGGAG 39647 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 39 32 99.8 35 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : TATGTAAGTACATTGTCTTTCCAGGCTTGTTCAATATGAATAAGTGCCCATTGACGTTTGCAAAAAACGAAATGCTGAATGCCGGATATTAAAAGCCAATCCTCTTCTGAATAATACAATTGAGTCACCTCCAAAGCAGCTATTAAATTCGCCTATGCTCATTATTTCACCTATCGTCTTTGATTACCAGCATAAGAAGTCAAAAATATAGCGCTTACAAGTTTGTGGCCAAAAGCTTTTTCAAAATTTAGTTGATCATATCAGGCAGGCATTGAAGATACGTTAACGTACTATGGTATATTGTTATTGAAGAACAACATGTTTTCGACAATGAAGGTCTGAGTGCGAATGTAGGGCACACATGAAATCGCCGGTACATTCGCACTCCTGTTGTTAAGTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTGTTATGTGTTAGGAAACACATTATGTTGTG # Right flank : TAGGATTGATTATAGCGGCAATTAAGTCTCGTAATCCTCATAATTACATGAGCTAAAATACGCCCTTTGAAGAAGCATATGGGGGTTAAATCATTCCAATTAAATGGGATGCGCAAAGCAAAATTATTGCTTGAAGCCTGCACTTTCTCCGCAAAAAAACCAGCATGAAACCCGACTGGAAGTCTGGCACATGCTGGCTTATTTGCTTGGAATGTCTGCTGAATTTACCTACAAATCCTTTCGCCATAAAGCTAAAACCGACAAGATAATAGCAGTCATCAAAGTTGTCTACAGCTCATATCGTTAATAGTTCATACAGTTAATTTCTTTAGATATCTTGCGATTTTTAATATAGTGTTAGTCTTTTTTCACCCATCCGTGACACTATGCGGCTTGCCCTCAACCCTGAGTACCTCTTCAACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCCGTAGCTTTTGCAACCCATCAAACGAAAAGCCAAGCCGTCGCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //