Array 1 113094-114220 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZC01000067.1 Pseudomonas aeruginosa strain VET-24 NODE_5_length_257160_cov_24.8874_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113094 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 113155 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 113216 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 113277 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 113338 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 113399 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 113460 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 113521 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 113582 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 113643 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 113704 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 113765 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 113826 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 113887 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 113948 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 114009 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 114070 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 114131 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 114192 28 79.3 0 A..........A..C..-.....A....T | C [114196] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123393-125131 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZC01000067.1 Pseudomonas aeruginosa strain VET-24 NODE_5_length_257160_cov_24.8874_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123393 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 123454 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 123515 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 123577 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 123638 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 123699 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 123760 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 123821 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 123882 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 123943 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 124004 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 124065 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 124126 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 124187 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 124248 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 124309 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 124370 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 124432 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 124493 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 124554 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 124615 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 124676 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 124737 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 124798 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 124859 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 124920 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 124981 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 125042 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 125103 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //