Array 1 12903-13907 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTW01000027.1 Salmonella enterica strain BCW_3300 NODE_27_length_51990_cov_2.37555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12903 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 12964 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 13025 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 13086 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 13147 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 13208 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 13269 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 13331 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 13392 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 13453 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 13514 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 13575 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 13636 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 13697 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 13758 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 13819 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 13880 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30472-31843 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTW01000027.1 Salmonella enterica strain BCW_3300 NODE_27_length_51990_cov_2.37555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30472 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 30533 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 30594 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 30655 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 30716 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 30777 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 30838 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 30899 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 30960 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 31021 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 31082 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 31143 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 31204 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 31265 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 31326 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 31387 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 31448 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 31509 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 31570 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 31631 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 31692 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 31753 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 31814 29 100.0 0 ............................. | A [31841] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //