Array 1 163180-163913 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJM01000003.1 Listeria monocytogenes strain FSL L7-0407 NODE_3_length_367053_cov_15.382851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 163180 29 100.0 35 ............................. TTTAAAAATGCACAAGGAGAACAAGAAGCCGATTT 163244 29 100.0 35 ............................. AACTTTGACTATATTAAGCAAGATATTGTTACTGC 163308 29 100.0 36 ............................. TGGTTCTAATATAAGTGGTTGTCCCGCCCATTTACC 163373 29 100.0 35 ............................. AAATCTGAGGTCCGTATTTAATAATCGCTTTTATG 163437 29 100.0 35 ............................. GCTTATCATACATACCAGATTTATGGATTGCCGCC 163501 29 100.0 34 ............................. TGTCCAGCATAAATGGCAAGTTTTAACTTTTTAC 163564 29 100.0 34 ............................. CTTTCACTAGATACTTTTGTAGCTTTGTAACTGT 163627 29 100.0 35 ............................. TGCGTTACGTCGTCCAACATGCGACACAGTTCGCG 163691 29 96.6 36 ....A........................ GTGGTTTCAGAGGCTGTGGCTGATTGGTTTGAGGAA 163756 29 96.6 34 ..............A.............. TTAGCTTGCAGATTTGGTACTGATGAAAAATAAA 163819 29 100.0 37 ............................. GAAAAAGCACTTTTCAGTACTCGTTCGTTTTCTTTTT 163885 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 98.0 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGAACTTGAGTAGTGTGAAAAACACCAGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATGGGAATTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCATTCAGATTTAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 180758-182083 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJM01000003.1 Listeria monocytogenes strain FSL L7-0407 NODE_3_length_367053_cov_15.382851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 180758 29 100.0 36 ............................. TTGATATGCAAACAGCGGTTACAGAGGACGAAGCAG 180823 29 100.0 35 ............................. AAACCATACTCCCAGTAACTGACCATCTTGATTTT 180887 29 100.0 36 ............................. GAAAAAAACGGCGAATCTGTAAGTATATGGGTAGAT 180952 29 100.0 37 ............................. TTTCAATATGCAAATACAAATATTATTGAAATTAATA 181018 29 100.0 35 ............................. TTTTGTTAAAATCCATTATTTCGTTTCCTCCTTAA 181082 29 100.0 37 ............................. TCGAATTTAATTCCGAACAAAGTCCCGGGCCTCAAAT 181148 29 100.0 35 ............................. GACAAACGTAGCATGGTGTCCGATTCTCGAATCCC 181212 29 100.0 34 ............................. GGACTAAAAACTGCAAAATTAGAATTGGAAATGG 181275 29 100.0 35 ............................. TACGCTGAAGCTTTTAATTCTAGATCGAAAGAGAT 181339 29 100.0 37 ............................. TAAGTTAAAGGGCAACAGTAACGCAATCGGTAATCGC 181405 29 100.0 34 ............................. AATTCTTCGGAGCGATTACGACAATGACGTCCGC 181468 29 100.0 37 ............................. ACAATAATTTTTCTCTTTTTATCCATTTCTCCGCTTC 181534 29 100.0 34 ............................. AATATAGTGGGTTGTGTGAAAATACCACCTTGGG 181597 29 100.0 36 ............................. CAGTTTCTCGGGGGTTATTTACAATATATTAGGAAC 181662 29 100.0 35 ............................. TTTGGAAAAAATAGTATTTAGGTTTGTCATATCTC 181726 29 100.0 37 ............................. TCGCTTTAATCTCTGATTCTGTGAATTGTGTTTTATA 181792 29 100.0 37 ............................. ACCGTCCCCCGTGCATTCATCTTCATCAAACCTATAG 181858 29 100.0 37 ............................. AAAAGATGATGTAACTGAACTTTTACTAGGTAATGCA 181924 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAGATTCGCCGTTTTGA 181989 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 182054 29 93.1 0 .......................A....C | C [182077] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGATCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAAAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGTGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //