Array 1 115086-115413 **** Predicted by CRISPRDetect 2.4 *** >NZ_VANG01000104.1 Photobacterium damselae subsp. damselae strain 111bp-OG15A Contig_000102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115086 28 100.0 32 ............................ TCAAGCACTCAAAGCTATGTGTATAGACGGGA 115146 28 100.0 32 ............................ ATTAAATTATAATTCTGCGTTAATGACTCACC 115206 28 100.0 32 ............................ CGCCATCAAATCATCAGGAACACCATCACCAG 115266 28 100.0 32 ............................ CCGATGCCTTTAAAGATGATACGGGTTTTTCT 115326 28 96.4 32 .......................T.... ATTAAATGAGCACTGATTCACAAAAACGGATA 115386 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGTGTAGATCTAAAAGTCTCAAACTGTCATCTAATAATCTTTATTTTGATTCTTTTGGTGATTATTTTAGGCTAAATTCAAAAGGGACCAAAAGTAGGCGGTTAAGTTCAAGGAGTGATCATGTCTTCAATACCAACAACAAAAGAGGAATTGGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATAGACTTAAAAGCCATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTCATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : CACCAGGATTTTTTATGATAGAAACACCAGGATTTTTTATGATAGACACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75856-75587 **** Predicted by CRISPRDetect 2.4 *** >NZ_VANG01000089.1 Photobacterium damselae subsp. damselae strain 111bp-OG15A Contig_000086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75855 28 100.0 32 ............................ TCCCACTTAACCATCGACAATGCAAGGCGTTG 75795 28 100.0 32 ............................ ATGTTAACTAGCGTCATTACCGTGATAAATGC 75735 28 100.0 32 ............................ GAGTAGACGGGACTGGTACTGGTCTACAACGT 75675 28 100.0 32 ............................ ACAATAGGGATATTATTATGTCTACACTAACC 75615 28 82.1 0 ...........CA........C..CT.. | A [75593] ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCTATCTTACCAATACCTCATGATATTGCAGGGTATCGCACTGTGCATCGCGTACAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAAAATCCCTGATGCGTTACAAGAACGATTAGCTTTACCTTTTATTCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTGTTTATGTTGCGCTAGGAGAGATTCAATCAGAACCTGTTTTGGGTGAGTTTTCTAGCTATGGTATGAGCCGTACAGCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTAAGCTTATACTTAACTTATTGATTTATAAATAAGATTCTAATAGGTGAGAAAAAAGGGTTTTTTATTGGAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCAAATAAAGTCTTCA # Right flank : GTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATCATTAGCAAAAGCATAAATATAGGTACTACATGCTCACAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCAGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATACCGAACCCAGCTGCAAAACAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAAAAAGCCCGTCGTCCAACTAAGCCAACTAAAAGCTCCCAACGTCGTCGTTTAGAGTCAAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTATTAAC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //