Array 1 396829-397730 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMXH01000002.1 Paenibacillus sp. FJAT-26967 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 396829 32 100.0 35 ................................ TCTTTTAAAGGCACAATCTCCTCAAAGCCGAGGTA 396896 32 100.0 35 ................................ AGCACTCGGAGCTTCCCAACTCCTCAGTGTCCTTA 396963 32 100.0 35 ................................ TTCCAGCTCAAAGCCTTCAAATGGACGTAATTCAT 397030 32 100.0 35 ................................ AAAAAATGAAGAACGGTGAGAAAATCACCTTCAAT 397097 32 100.0 34 ................................ ATTTCACTTGCTGCGATTGGTACGGTTTGTCCGC 397163 32 100.0 34 ................................ GTGGTGGCCGGAAAGCGATGTGACTATGCAGGGA 397229 32 100.0 34 ................................ TGCTCCTCACTAAGCCCCCTTGCTGCCTGCTTAA 397295 32 100.0 36 ................................ CGCCAACTCATGCTTGATTACATTAAAAAAGGTACA 397363 32 96.9 33 ....................T........... ACTTGCTCTGAGCTTATCTGTGTATGATTTTTG 397428 32 100.0 37 ................................ ACAAAAAAAGCCTTGGAAACCGAATTCGGTTCCCAGG 397497 32 96.9 33 ..............A................. CTACCAGAAGGATACAGTGTCAAAGAGCAGTAC 397562 32 90.6 36 ...........TG.A................. TTGATATACTCTCTCAATGGACATTAACAGTCCTTC 397630 32 87.5 35 ..A...T.......A...A............. GTTTTGGTATGGAGCAGAAAGTTATTGAGGGTAAA ATA [397642] 397700 31 84.4 0 ..........G...A.A.....-.....G... | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 96.9 35 GTCGCACCTTACATGGGTGCGTGGATTGAAAT # Left flank : GGAAGCATAGTGGAGCAGGGGACGCATCAGGATTTGCTGGCACGGGGCGGGTATTATGCGCAGTTGTATGGGTAGATCGATTAGGGAATTATATGATGAGCATAGGAATGAAACAGACCGAAAACAGGGAGTCCTGGGGACTTTCTGTTTTTCTGTTTGGGAACTTTATCTTGGTAAAAAGATTCGAAGAATTTCTGGTCGAGATATAACCCGATGGAAGTGAAGTAAGATAGCAGAGTTGATTAAAGCTCGAGAATATGGGAAAATCAGGGATGATCCTTGAGAAGCTTTCTTTTAGTTCGAGAACATGGGCTAGCTTCATATTATAGTAGTGCGAATGCCAAGCGAACATGATTTCCCTAGGGGATTCGCACCGAATCTTTTACTTTTTGAGATTTATTTTACAAATATAGTAATTTTATATTTTGTTTATTTCGGATAATTTAAACATATTTTTAGTAAAAGGTTCGATTTTTAAGTTTCTTTGCTTGAAAATCGGC # Right flank : TGGGCGCCGTGGATGCATTCGCCGTTCTGCAAATCAATTTGACCCATGCGATCATGACCTTCGGAACCGTACTATCCCTTGCGCAGAATTTGTTAGCCGGCGCACAGCGGATTCAAGAAATTTTGGACGAAGAAGAGCCGGTAAGGATCGGTACTTGGGAAAGCCAACAGGTGTCGGAAGCCATGGTGGAATTCCGCAACGTCGAATTTTCCTACCAGTCGGAAGAGATTTCGCGTATGGAGGATTTTGTCCAGCGCAACATCGTGCGGGCTACCACGACCAAGCGTGCGCAGAGCCGCCGCAAAGCGTTAGGCCAGGTTACCGCCATTGTAGGAGCCAGCGGAAGCGGCAAGAGCACGCTGATCAAACTGCTCCTTGGTTTCTATCCCCTAGACCGCGGGGAAATTCTGCTGCAAGGCAAGTTGTTCGGGAAGAAATTCGCGGAAAAATTGCTTATGTGCCGCAAGATGCCTTCTTGTTCAGCGGAACCATCGAAGACA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 398640-399795 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMXH01000002.1 Paenibacillus sp. FJAT-26967 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 398640 32 100.0 34 ................................ TACAATCGAATCTGTTTCTATGCCTACCGGAAGA 398706 32 100.0 34 ................................ CCTGGGAGCAGATCGCGGCGGCCTATCTCGCCAA 398772 32 100.0 36 ................................ ATTGCAACTGTCTTACTAAAAAAATGTTATTTTTGC 398840 32 100.0 34 ................................ GTTGCTACACTGAGCTCTGAGAAGTGTATCTCCG 398906 32 100.0 33 ................................ AGCCATTCGGACAGCCGAGCAATTAGGCTTTAC 398971 32 100.0 32 ................................ ATCCGATTGCTGATTGCAATCGCCCATGGCCC 399035 32 100.0 36 ................................ TGTGTTAGGCGGTCCCATTGGAGCCAAGGTGCTTGG 399103 32 100.0 35 ................................ TTAAGCACGAATCCAAGTATCCAACAGACCGCCAA 399170 32 100.0 35 ................................ CGCGAATGTTCGCAATCCTTGCGTGATTAAAATCG 399237 32 100.0 34 ................................ ATCAATGTAAATAAACGATCCTACTGATGGTTTG 399303 32 100.0 34 ................................ TGGACATTATCGAGGGTCCGCTTTACCTTATTCA 399369 32 100.0 35 ................................ AAAAGGCTCCTTATCGACCGGTCGAATTGTTTCGA 399436 32 100.0 33 ................................ GGCAAGATTTAAATCTTGTTGCTCCAAGTCTAA 399501 32 100.0 34 ................................ ACGTAACTTCGCGGCTTCTTTCATTGATTTAAAG 399567 32 100.0 34 ................................ ACTATCGCACCTCTCTTTCAATAGGCTGCATGTC 399633 32 96.9 32 .................C.............. AGCTATCTTCTTGGAAATGACTAGGGGGTTGA 399697 32 96.9 34 ..................A............. AATCAAAGGTATGTGGGATAAAGTGACTGGGTTC 399763 32 84.4 0 ...A........A..A........C......A | G [399792] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 98.8 34 GTCGCACCTTACGTAGGTGCGTGGATTGAAAT # Left flank : CTGCAAGGCAAGTTGTTCGGGAAGAAATTCGCGGAAAAATTGCTTATGTGCCGCAAGATGCCTTCTTGTTCAGCGGAACCATCGAAGACAACATCTGCTACGGCAATCCGGAAGCGTCGGCAGAGGAAGTAAGGGTGACTTTCTGTTTTTTCTGTTTGGGGACTTCTTCTTGGGAAATTAGATTGGAAGAATTTCTTGTCGGGATACAACCCGATGGATGAGAAGTAGGATAGCAGAGTTGATTAAACCGTTAGAATATGGGAAAATCAGGAATGATTCTGCGTAACTTTCTTTACAAATTCGAGATCATGGACAGCTTCTTATTATTGTAGTGCGAATGCCAAGCGAACATGATTTTCCTGGGGGATTCGCACCAATTCTTTTTCTTTTTGAGGATAATTTCACAAATATAGTAATTCTTTATTTTGTTTATTTGAGTGAGTTTGTAGTTGTTTTTAGTAGAAGGTTCGATTTTTAAGTTTTTTTGCTTGAAAATCGGT # Right flank : ATGCCATTTAATAAGCACGTCTCAAGACCGATCTATTTCCACAACAAAATCTTCTTCGCAACTTCGCGAAGAGGTTTTTTTGCGTTAAAAACAGCTGCAAGCTGATAATAAAACATTCTCAATTCACATAACCCAAAAAAATATCGAAATATGTATATTTTAGGAAGGAACTATAATGAGTCTGTAGAATTACTTTATGGAAGGTTTAGTAAATTATATAGGTATATGGAACTACTTCTTAGGTTACATTGATTTTTTTGATGAGGAGGTGACAACTTGAATTATATTGCCCATATTCGTGAAAGCGATGAGGAGCAACAGAGCGTAGAAGAGCATCTACTCGGCGTACAATCTCTTGCTGAAGGTTACGGTGCTGGTATAGGTCTCAAACACATTTGTGGATTGGCTGGTTTGCTGCATGATATGGGGAAATACACGAATGCTTTTCGTAATTACATTCTGGAAGCGGTATACAATCCGGAAGCCCCGCCAAAGCGGGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 408210-409578 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMXH01000002.1 Paenibacillus sp. FJAT-26967 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 408210 32 100.0 34 ................................ TGGTGTCACCATTAATATAAATTACATAAACTAA 408276 32 100.0 33 ................................ CCTAGAGAAAAAGAAAACAGAGAGAGAGTATTC 408341 32 100.0 33 ................................ CGAACAAAGCGCGAATCAAGAAGACTGCTTTTG 408406 32 100.0 35 ................................ AGACGCGAACCCTTTTATCATGACGTTTGAAAAAG 408473 32 100.0 36 ................................ CCAAATGGTGCCGTTTGTATAGAGGTAGGCAGTAAT 408541 32 100.0 36 ................................ TTTTACGTAAGCTGTTAAGCCATTAATGAGCTTGAC 408609 32 100.0 36 ................................ ATCAGATTCAACTCGCTCTCTTCGTTTGGAGTAGGA 408677 32 96.9 35 .........................C...... ATCGCGTCGATCATGTCCTGTTTACTCATGCTGTT 408744 32 100.0 35 ................................ GTAAATGTGCGTTTTGTAAGGATACTCCCCGCCAG 408811 32 100.0 33 ................................ TGTAACCCTGGAAGCCTAACCCGCATGTCTGCC 408876 32 100.0 34 ................................ ATAAGTAGTACCGTTTACCAAAGACGTATTGACC 408942 32 100.0 33 ................................ GCCGACGCAGTTGCTGGGTATGTGGCGAATAAG 409007 32 100.0 36 ................................ CGCTTATGGGGACGGTGAAAATCAATGCCTGATCCG 409075 32 100.0 38 ................................ AAATATGTCCGTCACTTAGTTGTTAAATGGTGATACTC 409145 32 100.0 36 ................................ TGATCGGTGCCTAGCAAAAGGGATCGCTGAATTAGT 409213 32 100.0 34 ................................ TCGATATCAACAAAACGTGCGCCCATAAGACGGT 409279 32 100.0 35 ................................ TTCCGTGGAGTTTGTTGGCGGGCGTGACAAGCTGG 409346 32 96.9 35 .............G.................. TGACTGTGATTTGTTTCCCCATGTCGTTCCCCCTT 409413 32 100.0 33 ................................ TCTCTACCGTCACGGCTGATTATGTGGAGCGCA 409478 32 100.0 37 ................................ CAAAGAGGGGGTCGCGATCAAGGTTTCTGCCGATCAG 409547 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.7 35 GTCGCACCCTGTATGGGTGCGTGGATTGAAAT # Left flank : TGCGTAATGACCTGGATGAATATCCGCCTTTCCTATGGAAGTAGGTGCAGCTTATGCTTGTTCTAATTACGTATGATGTAAGCACGACCAGCGGAGGTTGCGCAAAGTATCAAAAATATGTCAAAATTATGGTCAGCGGGTACAGCATTCTGTATTCGAATGCATCGTTGATTCCACGCAGTTTGCCGTTCTCAAATTGAAATTGATCGAAGTTATTGATCCGGCACAAGATAGCTTGAGGTTTTATCAGCTGGGCAATAATTATAGAAATAAGGTAGAGCACGTCGGCATAAAAGAATCTCTGGACTTGGAAGGGCCTTTAATTATGTAGTGCGAATGTCTAGCAAACATGATTTCCCTGGGGGATTCGCACCATTAATAATACTTTTTGATGAAAAAGTTACAAATAAAGTAAGTGTGAATAAGCTTTATTAAAGTATTTAGTTATGATTACTAGCTGGAAAGCCGTTTTTTGAGGTGTTTTTGCTTGAAAAAACGCA # Right flank : TTGTGGCAGGTTCTTTCGACACAATTTCACTCTTAGCCGGTGATTTGAACGAACTTGTCCCTGCGGTTAAGAGAGAGATTGTAGGTACGATTATCGTTCCGGGAAGTGCCGACCTTGTGCAGAGTCTACTAAACGCTGGTTTCATGGATGAAATCAATATGATTATCCACCCTGTCGTTCTCGGGAGCGGCAAGAGATACCTGGATTGTATTGCGGCAAATAAGGGCCTCAAGATCATTGGTACACAGCTCTACGAAACGAGTGGTTCTTTGAGACTCCGTTATGAGGTTGTTAAGTGACCAAGTAACGCCAATTATTTATACCGAAAAGTAGTTAAAAATAATAAAAGAGGAGCCGTAAACCGGCTCCTCTTTTCAGGTTAATAGACCACTATTAATTGTTAGTTAGTGATTGTTGATATTGATTCCATAGTGTGTTCACGTCGATTCCGGTAATTGATAAGAATCGGCTTTCTTTCCAAGCTTGAAATTGATTGGCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //