Array 1 42102-39511 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAP01000017.1 Escherichia coli strain 37-1BK entry17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42101 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42040 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41979 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41918 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41857 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41796 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41735 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41674 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41613 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41552 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41491 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41430 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41369 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41308 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41247 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41186 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41125 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41064 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41003 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40942 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40881 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40820 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40759 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40698 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40637 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40576 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40515 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40454 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40393 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40332 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40271 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40210 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40149 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40088 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40027 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39966 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39905 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39844 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39783 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39722 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39661 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39600 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39539 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 119220-120775 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAP01000025.1 Escherichia coli strain 37-1BK entry25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119220 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 119281 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 119342 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 119403 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 119464 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 119525 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 119586 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 119648 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 119709 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 119770 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 119831 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 119892 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 119953 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 120014 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 120075 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 120136 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 120197 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 120258 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 120319 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 120381 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 120442 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 120503 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 120564 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 120625 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 120686 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 120747 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //