Array 1 120179-122158 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVS01000014.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5642 NODE_14_length_129401_cov_48.085663, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120179 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 120240 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 120301 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 120362 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 120423 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 120484 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 120545 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 120606 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 120667 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 120728 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 120789 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 120850 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 120911 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 120972 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 121033 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 121094 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 121155 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 121216 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 121277 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 121338 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 121399 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 121460 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 121521 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 121582 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 121643 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 121704 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 121765 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 121826 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 121887 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 121948 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 122009 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 122070 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 122131 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 185017-183157 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVS01000007.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5642 NODE_7_length_194361_cov_46.653089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185016 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 184955 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 184894 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 184833 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 184772 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 184711 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 184650 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 184589 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 184528 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 184467 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 184406 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 184345 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 184284 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 184223 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 184162 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 184101 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 184040 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 183979 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 183918 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 183857 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 183796 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 183735 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 183674 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 183613 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 183552 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 183491 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 183430 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 183369 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 183308 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 183247 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 183186 29 96.6 0 ............T................ | A [183159] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //