Array 1 38-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLO01000109.1 Campylobacter fetus subsp. testudinum strain 12S02855-1 contig00112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 38 31 100.0 34 ............................... TCATAACGGCTAGAGCATTTGTTATAGAAACCAC 103 31 100.0 35 ............................... ATAAAGAGATCTACGGATCAAGTTTGAACCTTTTT 169 31 96.8 0 ..............................G | ========== ====== ====== ====== =============================== =================================== ================== 3 31 98.9 35 GTTTGCTAATGACAAGATTTGTGTTGAAACT # Left flank : CAAAAAAGCTTTTCCAGCCTTTGGGCTCGTTCCGTTTG # Right flank : GGTCAAAAAATACTTTATCTATGTCTAGCATTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAAGATTTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 10498-10140 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLO01000028.1 Campylobacter fetus subsp. testudinum strain 12S02855-1 contig00028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 10497 29 100.0 37 ............................. CAAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 10431 29 100.0 36 ............................. CTATCTTTTGCATTTTGTATATTAGGCGCAGGTTGA 10366 29 100.0 37 ............................. TTTTTCTAATTCTGTTTTATTTGTTTCTATATTTTCT 10300 29 100.0 36 ............................. CTTGAATTTTCTAAAAATACCTTCCGGCCATTTTTG 10235 29 93.1 39 ......................A..A... TAGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 10167 28 75.9 0 ..........C....AGC.C..-..A... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 94.8 37 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : TTTGCCGGATTTAC # Right flank : TCACATAGAGCTCCAAAGCAGCAACATTCAAAACGCTAAAAATGTAAATGAGAAAAAAGCAGCTTCTGTGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATAGCTAAAAATAAAAATAACAAATATATAAACGCCTTTAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAAGAGATCACTAT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 4180-5395 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLO01000036.1 Campylobacter fetus subsp. testudinum strain 12S02855-1 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4180 30 100.0 35 .............................. AAAATAAGAGAACACGAGGCCGATTGTGGTGGAAC 4245 30 100.0 37 .............................. TAACTAGCCAACCAGCATAAAAATTATAAATGGTATA 4312 30 100.0 36 .............................. TATTAGAGTTTGCTACTAAAATATTAGGTCTATACC 4378 30 100.0 36 .............................. AATATATCACAAACAGGTATATTACAGCACTTCAGA 4444 30 100.0 36 .............................. ACTTATAAAAACTCTTAGCCCATTTGCCACTAGTTA 4510 30 100.0 36 .............................. AATATATCACAAACAGGTATATTACAGCACTTCAGA 4576 30 100.0 36 .............................. AAGCGGACAGCATTCCAATGCTGGAAATTATATCCA 4642 30 100.0 36 .............................. AAGCGGACAGCATTCCAATGCTGGAAATTATATCCA 4708 30 100.0 36 .............................. TGAGTTGTTTTTATATCCGTATGACCCAAAGCTATC 4774 30 100.0 35 .............................. CACTAGCTATGCCTTTATCAACAGTGTCCTTCGCC 4839 30 100.0 36 .............................. TGGAGATATTCCGAATAGAAAACAAGACGGCACATA 4905 30 100.0 36 .............................. TTTAAAAAAATACTGTTATAATACAAACATTGTTGC 4971 30 100.0 36 .............................. TTCCTCATCTCCGTCTGGATCACATTCGTCAAATAT 5037 30 100.0 36 .............................. ATTCCTAAAATACACAGTAGCACTACCGTTTAGCGA 5103 30 100.0 36 .............................. TTATAATTTTGGCTGCGTCTTCTCTCTCGCGTTTTC 5169 30 100.0 36 .............................. AAAATTGCAAGGATTAATGATGCGCTATCCTAGCAT 5235 30 100.0 36 .............................. TATTAGAGTTTGCTACTAAAATATTAGGTCTATACC 5301 30 100.0 35 .............................. TCTTAATAGCCTAAAACTTTCAGCAGCGTTTTTTT 5366 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 100.0 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTATTTAGAAGTGGTAGAATAGGCGTTCGACAA # Right flank : GAATAAGCATTTTTTGCTCAGCAAAGAGAATAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2698-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLO01000032.1 Campylobacter fetus subsp. testudinum strain 12S02855-1 contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2697 30 100.0 35 .............................. GAAATATAATATCTACCAACCACGCTTTGTATCAT 2632 30 100.0 35 .............................. TTTGACTATCTTTTAAATTTTGCATTTGAATAAGC 2567 30 100.0 36 .............................. ATAATGCAAGAGATATAAGATATGTGGTGAATAGGT 2501 30 100.0 35 .............................. GAAATATAATATCTACCAACCACGCTTTGTATCAT 2436 30 96.7 36 ..............C............... CTATGCGGTTTTGGCTAGTTTCATCGCCTTGAAAAA 2370 30 100.0 36 .............................. TAAAACTCTTGAAACAAATAAATATATCGTTCAAAA 2304 30 100.0 35 .............................. TATTGTGTAGTACCATACTATGGGAATTTAGTAAT 2239 30 100.0 36 .............................. TTGCAAATAGCGTATATAGCAAAAACTCCGCTGGTA 2173 30 100.0 35 .............................. TTTTTAAAGCTTTTTACTAAACGTTTTACTGCGAA 2108 30 100.0 37 .............................. TATAACCTCTCCATTATCCAGAACTTTAGTTACTAAT 2041 30 100.0 36 .............................. AAATTAAAAAACTTTGTAAAATTATTATATTTTGTA 1975 30 100.0 35 .............................. TATTGTGTAGTACCATACTATGGGAATTTAGTAAT 1910 30 100.0 35 .............................. TTAAACTCTCCACCGCTAAAATCTTTTAGTAAAAA 1845 30 100.0 35 .............................. AAAGCCACAGAGGAAAAGTTTGTAAATAAGCGATC 1780 30 100.0 34 .............................. CTAACTTTGCTTTTTTACTTCATAGGAGAAAAAA 1716 30 100.0 35 .............................. ATAAATCAAAAGATAAAAATACTTGAGAATAGAAT 1651 30 100.0 35 .............................. TATGTTTTTTGCAGGATATGCAAGAGACGAAGTTA 1586 30 96.7 41 ..............C............... CGAGATACAGATAGACTAATCGCCATGGTCGAAAACGCAAA 1515 30 100.0 36 .............................. TGGATTTGCATCTACAGAGTTAAACAAGCTTACAAA 1449 30 100.0 36 .............................. AGTTATCGCAGACGGAGAGAGTATGACCCCAGAAAT 1383 30 100.0 37 .............................. AGCATTTCTTTAAAGAGAATGCAAACGGCAATTTTTA 1316 30 96.7 36 ..............C............... GGAAAATGTAAAAAATTACATAGACTGCGCAGAAGA 1250 30 100.0 36 .............................. ATATCACACAAAAGAGCCAAAAAGTTATCATCAAAG 1184 30 100.0 36 .............................. CCACTAGCTATGCCTTTATCAACAGTGTCCTTCGCC 1118 30 100.0 36 .............................. TTGTTCCTCTAAAATTTGATTATTAATAGAAATCTT 1052 30 96.7 36 ..............C............... GGAAAATGTAAAAAATTACATAGACTGCGCAGAAGA 986 30 100.0 38 .............................. AATGGCAAACAAGACAAAGTAGAGTGGAAAGTCTGCAA 918 30 100.0 35 .............................. AGAAGTCTAAAACAAAAATATTCTTCAATAATTAT 853 30 100.0 36 .............................. TTCTAACCAAATAACCATAAGACTAACACAAGGCAA 787 30 96.7 36 A............................. CCCTGGAATGACTACAATAACTGAAGTGAAAAAAGT 721 30 96.7 36 ..............C............... AGACTCTTTAAAATTATGTTTAACTAACTTATTTTC 655 30 100.0 35 .............................. GTAGATCCATTAAAAGAAAGCAAAGCCATAGAGAT 590 30 100.0 34 .............................. TTTTTTCCTCTGTAAATTGCTTCCTATCTTTTAA 526 30 100.0 35 .............................. GGATCAAATCTAGGGGAGAATATCTTTAAAAATTG 461 30 100.0 35 .............................. CAGACGAGGCGATTAATTTTATTAAAGAAAATCGC 396 30 100.0 36 .............................. ACAGAGTATGCGCTCTTTTGTCCTGCGTAGGAAACT 330 30 100.0 37 .............................. TACTTTCGAACAACTGGTTAAGCAGGGGGCTACCACA 263 30 100.0 35 .............................. ACAGCAAGAGGCTTTAAACGCACAGCAAGAAAAAA 198 30 100.0 37 .............................. TAAATATGAATTTTGATAAAGCCATCGCAAGAGCTAA 131 30 100.0 36 .............................. TGGTAAAGCCGTCCCTGCAAAATTTGCAAATAGCAA 65 30 96.7 0 A............................. | ========== ====== ====== ====== ============================== ========================================= ================== 41 30 99.4 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : TCTTTGAAATATCTTGATATATCCTTGCGTCGGCTTAAAAGCTGTTATTAGCCTGTCGCCGTCAAATGTTAAACAGTCTTTGAAACTTGATTAAAGGTATCTTTTATATATTCTAAAGCGTCTATAAAAGTACCTGTGAATTTATGATTAGTTTGCGGTACTTCAAAATCGCAGATCTCATAGAATTCTTTATACTCTTTTGCATCATCTATATCCTCTTTGTGTGGAGTAAGGATATCGAATACTTCAACTATTTTGCCGTCTTTTACTGAAGTTATGGGGGCTATAATCCCTAAGCCTTTTGTTCCTTTATCATCATAGTCAGGAACTTTTATAGCCCATTCTATTCCATAGTACCCTATAATAAGTTTGCGATTTTCCATTTTATCACCTCTTTTTTATCATATATTGAAGCGCTTTTGAAATAATTAAAAGTAGCTTTATTACCATCTTTATGTTTATAACAAGTCACTATCTCATTTCCATTAAAAAAAGAACTT # Right flank : CTAGTATAAAATTTTAGACTTGTCAAGGTATTTTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 19-710 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLO01000064.1 Campylobacter fetus subsp. testudinum strain 12S02855-1 contig00067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 35 .............................. GTAAAAAAAATAAAGGATAAATAAATGAATAAAGT 84 30 100.0 36 .............................. TTTAAAATTCGACGGAGATTTTACCATAGTGGGAGA 150 30 100.0 36 .............................. AATAAGTTCGGAATAATTAGATTTAAAGCTATCTAA 216 30 100.0 37 .............................. TCTTATTGCAAGTTAGCTGCTTATTTGCTAAAATTGT 283 30 100.0 36 .............................. AATTATGTAAAAAATGCAAATAATATCATATTCGAT 349 30 100.0 36 .............................. AAAACTTGAGAGAAACCACTGTTTTAACAGCTTAGG 415 30 100.0 38 .............................. TCTAAAGAGATAGAAGAAGTCAACGAGATAAACAGACT 483 30 100.0 36 .............................. TAGATTTAAATAATTTTACAAAGGACAAAAAATGAA 549 30 100.0 36 .............................. TTTAAGCAGCCCATTAAGCGGAGTGTTTTTTTACAG 615 30 100.0 36 .............................. TATAGCAAATAACTATGGCTTAGATAAATTACTATT 681 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : TGTTATTCTCCCTAAATAG # Right flank : CGTCGCGGAAGCAACCATTAAGGGTAATAGTCAAAAAGTTTCAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //