Array 1 6461-4839 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJNH01000011.1 Listeria monocytogenes strain BCW_3909 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 6460 36 100.0 30 .................................... GACATTTATGAAATATTCACCTGAAATTTA 6394 36 100.0 30 .................................... ATACCTAGAGCTTTGGTATCCGTCAGACGG 6328 36 100.0 30 .................................... TTTCCTTTTAACTGATTGCTTATTAAGGCT 6262 36 100.0 30 .................................... TACGTAAAGTTCTTAGATGGTGCGCTGATA 6196 36 100.0 30 .................................... ACAGCCCCGGAGGAAATGCACTACACCATT 6130 36 100.0 30 .................................... CTATATCTATAAAAGTTTTTGTATCAGCAA 6064 36 100.0 30 .................................... TGTAGAAGAGTTCGCAGACGCATTCGTGGA 5998 36 100.0 30 .................................... TTGTACTGATGGGCGTTTTGGGAATAGTAT 5932 36 100.0 30 .................................... ACATACTTGAACAAATAGTTCGAACTCTTG 5866 36 100.0 30 .................................... TTCAGTGACATTTTACCGAATACGCAAAAG 5800 36 100.0 32 .................................... AAAGATGCCCAACTAGTTATGACAGACCTTAC 5732 36 100.0 30 .................................... CTGAACTGTGATAGATTGTGATTCTTGTGA 5666 36 100.0 30 .................................... TCAATTCCCTTCTTCTTTTAATACTTGACT 5600 36 100.0 30 .................................... ACAAATTATTGTCATGTGTAATAAATACAT 5534 36 100.0 30 .................................... TACTAAACTATCCGGGCAGTAAATGGAGTT 5468 36 100.0 30 .................................... TAGATGAAATCACTATTGGCCAAGATTTAA 5402 36 100.0 30 .................................... TATTGTTGTCGGTGCAATAATACCGTTTAT 5336 36 100.0 30 .................................... AATGTCTGTCAATATTGATGGCAAACGTGC 5270 36 100.0 30 .................................... GAAGGCAGAATAACACCGCTTTTCACTACT 5204 36 100.0 30 .................................... TTCACTCATTGCGATAGCTGCAAATAGAAC 5138 36 100.0 30 .................................... ATAGAGAGAAGGCATTGTCATTAATATACT 5072 36 100.0 30 .................................... TTGAGAAGCATCTGCTGCATTAAGTAACGA 5006 36 97.2 30 .............................G...... TTCTACCTTTTTGGAAAAATCTTCAAACAT 4940 36 100.0 30 .................................... ATTAATTTCTTTCAGTTTTGAATTCATGCC 4874 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ================================ ================== 25 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAAAAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCCAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAAACAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAGACTTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACTGCTTGCTCAACTACTACAAAAGAAATCTCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACTACGACGAAACGGGAAACAAAATAAAACGAATCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGACTTCCAAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACGTACAAAAAATCCTCCTGCTAAACAAATAAAACTCTCTCGTCCGCAGAGAGTTTTTTCTTTTCTTAAAAAAACAAACTCAAATTCCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1155873-1154217 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJNH01000008.1 Listeria monocytogenes strain BCW_3909 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1155872 29 100.0 37 ............................. GACAGAATCGTGATACTCGATAGACGTATCGTGTTTG 1155806 29 100.0 36 ............................. CAACAAATAAACTATCTAGCCCCAGTATTTCCCCCC 1155741 29 100.0 34 ............................. ATCACATTTAAGTATTTAGAGATTCCTAAATTAA 1155678 29 100.0 35 ............................. AAACAAAAAAATCACGAGTGATCTATATTGATAAC 1155614 29 100.0 35 ............................. ACGAAAAACAAAATAAAAGAAGAAGTCCCTTTCTC 1155550 29 100.0 36 ............................. TTGGGAAAATGAACAGCAAACTATTGAACATTGGAC 1155485 29 100.0 37 ............................. AAGTTTTAGGCGACACAGCTGTTAAAGTGTGGCGAAA 1155419 29 100.0 34 ............................. ATGTGCGGAAGGAGTTTGGAATGAATGACTAAAC 1155356 29 100.0 37 ............................. TAATAAACACCTGTGTCTTTAACATATTTTTCGGGAC 1155290 29 100.0 36 ............................. ATCTATAATGTAAAATCTGGTAAAAATAGGAAAATA 1155225 29 100.0 36 ............................. TGAAGTGAATATGAATGAAAATTCAATTCTAACAGC 1155160 29 100.0 36 ............................. AATAAATAATCAGTAGGAACATTGAAAAAATCAGCA 1155095 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 1155031 29 100.0 36 ............................. TTTTTAAAAATGTTATTGATTTCTTAAATGAAAACG 1154966 29 100.0 37 ............................. AGACGAACAGCTAGAAGCATTGCAAGAAAGCGATGCT 1154900 29 100.0 36 ............................. AATGGTATATTTTGTCAACAGGTTTATCCTATTTAG 1154835 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 1154769 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 1154704 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 1154639 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 1154573 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 1154508 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 1154445 29 100.0 36 ............................. ACCAATGACCACAAAGCAAAGCAATTGGTGCTGTTA 1154380 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 1154311 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 1154246 29 93.1 0 .......................C....C | A [1154221] ========== ====== ====== ====== ============================= ======================================== ================== 26 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : | # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 280-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJNH01000010.1 Listeria monocytogenes strain BCW_3909 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 279 29 100.0 36 ............................. CAGTAACCAACGACTTTTTCACTTGTATTGTTGTCT 214 29 100.0 24 ............................. AGTTTTAAAGACAGAATAACACCA 161 29 93.1 37 A....C....................... GAATAATACGAATTTTGATTTTTGTGTTTTCGCTAGT 95 29 100.0 37 ............................. GACAGAATCGTGATACTCGATAGACGTATCGTGTTTG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 34 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGAAAATCATTGGAGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : T # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 16423-15873 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJNH01000010.1 Listeria monocytogenes strain BCW_3909 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 16422 29 100.0 37 ............................. ATAAACGGAATTATAACAGCACTAAACCAAGTTGCAG 16356 29 100.0 36 ............................. ACGGTTGAGCAAGAACTTGGCGGCTACACAGAAGGA 16291 29 100.0 35 ............................. TGTGTCCAAGGATGCGAGTAGGGGTGCTTGTGAGC 16227 29 100.0 36 ............................. AAGGCAGATTTCAAAACAACGCCTGTGCAGATGTAC 16162 29 96.6 37 ..............A.............. ACGGTTACAAAACCCTGAGGAGAGCCCGTCCAGCGTC 16096 29 100.0 36 ............................. TTTAGACACTTGAGAAGGAGAGCACGAGAGCTTCTT 16031 29 100.0 36 ............................. CTTGGATGAAATTCTGTAATAGTATTTTGTTTTTGT 15966 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 15900 28 82.8 0 ......A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 97.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAATTCCAATATCAAAGAAGTCATCACATCGGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATGGGAATTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTTAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAACTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //