Array 1 5668-6977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKI01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5668 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5729 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5790 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5851 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5912 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5973 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6034 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6095 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6156 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6217 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6278 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6339 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6400 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6462 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6523 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6584 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6645 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6706 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6767 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6828 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6889 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6950 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23109-25073 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKI01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23109 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23170 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23231 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23292 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23353 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23414 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23475 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23537 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23598 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23659 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23720 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23781 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23842 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23903 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23964 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24025 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24086 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 24147 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24208 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24269 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24330 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24392 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 24453 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [24495] 24495 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24556 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24617 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24678 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24739 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24800 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24861 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24922 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24983 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 25044 29 96.6 0 A............................ | A [25070] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //