Array 1 25202-26200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOR010000029.1 Bifidobacterium longum strain 1001713B170214_170313_H7 NODE_29_length_26313_cov_70.7195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 25202 36 100.0 28 .................................... GCTGGCAGCAGAAGGACTTGCTGTTTCT 25266 36 100.0 28 .................................... GAGTGTGCGTAGAGGCGGTGGAGCAAAG 25330 36 100.0 28 .................................... TTTTATCCTAGCGGCGTAATGCCGCCGG 25394 36 100.0 28 .................................... GCGAGGCCATGCAGGCGTTGGCCCGGTG 25458 36 100.0 28 .................................... AAAGATTTAAAAAGGGCGCACGGCGCCT 25522 36 100.0 28 .................................... TGTGGGTTGGCGTATGCCGGGATATCGG 25586 36 100.0 28 .................................... GGTACAAACGTCACGGATACCAGCCCGT 25650 36 100.0 28 .................................... TAGAGATTAGTGTCGATAATGTCCATTG 25714 36 100.0 28 .................................... GTGCGCCCTAATCTTTGATTAGGGATTT 25778 36 100.0 28 .................................... GCCCCGAACAGGTGAAGGCCCTCGCACT 25842 36 100.0 29 .................................... TGAGAGTTCCATTGCCCCCAGTTCGTTGT 25907 36 100.0 28 .................................... CCCTACAGTCCAGCGATAAGGTCGATGA 25971 36 100.0 29 .................................... GATGAATCAACGCATGAGTTGCGGTTTGA 26036 36 97.2 28 .................................C.. ACAAGGCAAGTGTTCACACGGCCTCAGC 26100 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 26165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 16 36 99.8 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGTTTACGCTCAAAAAGCACATTAGATTCAAGCTTAGGGGCTGCGGACATTTTCTTGGAGATAATCACGCAGCCATTCCTTGGCTTTGACGGTATTGTACCGGGCTCATCCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 73675-72097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOR010000010.1 Bifidobacterium longum strain 1001713B170214_170313_H7 NODE_10_length_73798_cov_72.3989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 73674 36 88.9 28 GCCC................................ CCGAGGCCGGTAGGGTTGCGTGTCTGGT 73610 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 73546 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 73482 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 73418 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 73354 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 73290 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 73226 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 73162 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 73097 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 73033 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 72969 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 72904 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 72840 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 72776 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 72712 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 72647 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 72582 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 72517 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 72453 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 72388 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 72324 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 72260 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 72196 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 72132 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 25 36 99.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CAGATGCTCCACCACCTGGGCCGTCGTCATCGGCGTGGTGAAATACAACTCCACCGCACGCTCTCGTTCCTCAAGACTGAACATACGAAAATCTTTCCGTTCGGTCTCCAAGAAAACGTCCGC # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 145124-145468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOR010000003.1 Bifidobacterium longum strain 1001713B170214_170313_H7 NODE_3_length_155850_cov_75.3517, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 145124 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 145190 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [145196] 145274 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 145334 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [145382] 145382 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 145439 27 81.5 0 C.............C.....C....CG | GC,C [145456,145460] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGAGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //