Array 1 1541325-1539557 **** Predicted by CRISPRDetect 2.4 *** >NZ_VISQ01000001.1 Serratia fonticola strain 128R Ga0299865_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1541324 28 100.0 32 ............................ ACATGTTCCTGGCCGCGCTCTGCCGCCCACCC 1541264 28 100.0 32 ............................ ATTTCACGGCTACGCCATCCCTTCGTCGCTAA 1541204 28 100.0 32 ............................ AACTGGGAAATGCCGTCGGTACCTACCGGGAA 1541144 28 100.0 32 ............................ AGAATGGATATTGAAAACGTTAAATCTTAAAT 1541084 28 100.0 32 ............................ GCTTAGCACCACTGGCAACAGCACGCTGCAAA 1541024 28 100.0 32 ............................ AATTTGTTTGAACGGAGATTGCGGTGAGCCCT 1540964 28 100.0 32 ............................ ATATTCCATCTATTCCGAAGGCCTTACGCGTA 1540904 28 100.0 32 ............................ AGTGATCGCACTGCTAAGACTCAAATTATAGC 1540844 28 100.0 32 ............................ GCATGCGGCCAGAAATAACTATTTCCATTGAC 1540784 28 100.0 32 ............................ CATGAATTACGCTCAAGCCATTTTGTAATAAC 1540724 28 100.0 32 ............................ TTCACAATCGATAAAATTAGAACCCTGACTTG 1540664 28 100.0 32 ............................ AGTCCGCTGCCAGCAACACCGGCAACCGCTCC 1540604 28 100.0 32 ............................ CCAGTCAGTAACCTGCTTGCTCCATGCTTCAG 1540544 28 100.0 32 ............................ TCAATAATTCACTATGAGCAGTATAATGGGGA 1540484 28 100.0 32 ............................ AATCACATGGTCATTGTCACAATGCACTAATC 1540424 28 100.0 32 ............................ TCTGGTACTAATGATACCACATCGGTATGTGC 1540364 28 100.0 32 ............................ GGAAAGCCAATCAGGAACGGATGAAAAAAATT 1540304 28 100.0 32 ............................ TCACCAGTCTGGTAGTCCACAACCTGCGTCAG 1540244 28 100.0 32 ............................ CGCAGAGAGCACACCCGGATTGATTTTCACGT 1540184 28 100.0 32 ............................ ATTTGCGGCAGAAAAATAACCCGCCGCGCGAA 1540124 28 100.0 32 ............................ ATCGATGGGGATTTTGGGTAAAAAATTTCAGT 1540064 28 100.0 32 ............................ GCAAACGCCTATTTCTTGTTGGCCGGTGCGAT 1540004 28 100.0 32 ............................ ACAACGCCATACCTCAGCAGAAGCGCCACCAG 1539944 28 100.0 32 ............................ AGCGAAAAACAGGAGGTAAGCGCCTGCGCTAG 1539884 28 100.0 32 ............................ TTGGAAACCCGGTAAACACTCAGGATGCAGCC 1539824 28 100.0 32 ............................ TCTCTGGCCTCTGCCCACAGCTGTAAAACATC 1539764 28 100.0 32 ............................ ATCATGGTCACCAGCCTGGAAAACCTGTCCAT 1539704 28 100.0 32 ............................ ATGGGTTGCCGGGCAGATCGTGCGTCAGTCGC 1539644 28 100.0 32 ............................ AGTTAAAAAGGCGGTGGATGCCGCCGTAACAG 1539584 28 89.3 0 .....................AC.A... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTCACCGCCTTTGAGTCTTTATCATGGCGTAAGGGGCTGCGGGATTACACTGAATGCAGCGAAATTCAGCCAGTACCCGCTAATGTAAAATATCGAACAGTACGCCGCGTGCAGTTTAAAAGTAATGCTGAGAGATTGCGGCGTCGTTCTGTTAGTAAAGGGTGGATCACCGAGGAAGAGGCGCGTATGCGTATTCCTGATTCGGTAGAGAAACGCACTACGTTGCCATTTATTCGTTTAAAAAGCCTTTCTAGCGAGCAGACATTCTTACTGTTTATCGAACAAGGCAAGATTTGCGATAACGCAACTGAAGGGATATTCAGTGCGTATGGTCTTAGTGCAACGGCAACCATTCCATGGTTTTAACCCTAATTTATTGGCTGATTCTAACTTATTGATTTAAAAGATTGGAGTCGGCCATGTTCAGAATAGGGTTTTGGCGCGTATTTCCATAGTATTGCTTTAATTAACAGTGTATTAGTGTTGATGCGCAACA # Right flank : TGTTCAGTAACTTCACCGCCAAACATAGGGGTAAGATACAGGGAGCGAACAGGAGAACTCACGTTGAACCAGAGCGAAGACCAACTGCATATTATCCGTTTTCTCAGCAAGCAGCATGTGCTCACACTGTGCGCCGGTCATGGCGCGGCGATGTGGTGTGCCAGCTGTTTTTACGTGTTCGATGCCGAACGTATGGCGCTGTGGCTGATGACTGAACCGCATACCCGCCACGGTGAGCTGATGCAACAAAACAGCCAGGTTGTTGGTACCGTTGCGCCGCAGCCAAAGACCATCGCGCTGATTAAAGGGGTGCAATACGCGGGGGAAATCACCTTGCTGGAGGGCGATGACGCGCAGATGGCCCGTGCGCGTTACTGCAAACGCTTCCCCGTTGCCAAGGTCATGAAGGCCCCGATTTGGCAGATTGCGTTGCAGGAAGTGAAGATGACCGATAACACCTTGGGCTTTGGCAAAAAGCTGCATTGGGTACGCTGATGATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1551070-1550261 **** Predicted by CRISPRDetect 2.4 *** >NZ_VISQ01000001.1 Serratia fonticola strain 128R Ga0299865_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1551069 28 100.0 32 ............................ TCATCGCATAGTGCATTTGGATTGCGGAGTTT 1551009 28 100.0 32 ............................ GCTATTGCCACGCGGTACCAGTACCTGGACGG 1550949 28 100.0 32 ............................ AGGATAGCTGGCGTCAGCCCTCAATCTGTCAA 1550889 28 100.0 32 ............................ CTCAGAAAGCGAATTGAGCACACCCGCAGCCA 1550829 28 100.0 32 ............................ CGGAACCCTTGCCAATAGAGATACATCGCCTG 1550769 28 100.0 32 ............................ GTCATGGTGCGACTCAGCAACGCGCAGACCAA 1550709 28 100.0 33 ............................ CTGCAAGCACGCCGGCTTCATTACCCCACAACG 1550648 28 100.0 32 ............................ CTGGAGAAAATGGTGTTTTGACCTATGCCAAC 1550588 28 100.0 32 ............................ ATTAAGCCAATCATGCTGCTCTTTGGTGAGGT 1550528 28 100.0 32 ............................ TTGCCAGTTACCGTTACCCACACTAGGCAAAA 1550468 28 100.0 32 ............................ CGTAAATAGTTCACACTTTTTCGATAGCTACC 1550408 28 100.0 32 ............................ ACATCATTGTCGTTAACTACAGCGGCGGTAAG 1550348 28 100.0 32 ............................ AATACCCGGCATCCTTCTCGAAATTCCAATAA 1550288 28 85.7 0 ....................GC..C.G. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTGTCTATGTCGACCGTGACGATCAGGGGAACGGCACACTTGCCCGCACAAGAAAGAAATCGTTTTATTGGTATAAGAAGGTTATCGCCAGTAACGGTTCAGATCTGAGCTAGTAAAAAAGGGAATACCTGCCTGGTGCGGTATTCCCAAAGAGAGATGACAACGTGTTTTTTTAACTTGAGATATCCAGGCCTGCCGCCCCGAGGGACGTTCCGCTGGCTTACGCCACGACGACCCCATCGCTACGCTCTTCCTAATATCTGACTTTGTCAGCAGTGTGAGGGAATGCCCGCTTTATGCGGCATTTCCTTTTCTTTTTGGGTGGGGAGACAAGCCGGTATTTGGCAGAGAAAGAGCATATCCGTTGTTAACCCTATTTTTGCCTTGTTATTTAATTTATTGATTTTTAATGGTTAATTTTCTTGGTGTAAAAAAGGGTATTTTGCCTTTTTAACGGAAGACGCTATGCAGATCAGGTGATTAGCGCTAGTCTGTAACG # Right flank : TCACCAGGTATATCCGATGACTATTTTTACCACTGATAATATTTATGTATTATTTTAATTTAATTATCATTGATTTTAATTAATTAAAATTTAACATTCATCAAGTTATTCAAAGGGGTAACTGTGCTAAAACAACAAGGGGAACGTTGGCATCTTGCGTGAAAATTCACGAGCTGGATGATTTTATGACATAAAAATAGGGATATTGCCCCTTTCATGAATAAACAATTCTCGCCTTCAGATTTAAAAACTATTCTGCATTCAAAACGTGCAAACATTTATTACTTACAATATTGCCGTGTATTAGTGAATGGCGGGCGGGTGGAATACGTCACTGATGAAGGCAAGCAATCGCTATATTGGAATATCCCTATAGCCAATACTTCAGTCGTTATGCTGGGGACCGGCACCTCGATCACCCAGGCAGCAATGCGCGAATTTGCCAAAGCAGGCGTATTAATCGGTTTTTGTGGCGGTGGTGGCACACCCTTGTATGCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1561321-1559191 **** Predicted by CRISPRDetect 2.4 *** >NZ_VISQ01000001.1 Serratia fonticola strain 128R Ga0299865_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1561320 28 100.0 32 ............................ AAAGCCAAGCATCAAAAATGCAACCGGGGGTA 1561260 28 100.0 32 ............................ GCTGACTATATCCCGTCGCTGCTTGCCTCATA 1561200 28 100.0 32 ............................ ATTTTCAACAGTTACATCACCAGTCACAGAGC 1561140 28 100.0 33 ............................ CGTATGGACGAAGATGAATTCCAGCAACTCTAC 1561079 28 100.0 32 ............................ TGTACGGTGATACGCAGCGAGTGTGCGGATAC 1561019 28 100.0 32 ............................ TAATTCAGTGAGAGGAACGTTTTGCGATTGCC 1560959 28 100.0 32 ............................ GGCTCGCGTGAACGCTTCCGGCGATGTTCAGT 1560899 28 100.0 32 ............................ AATACACGGTCATTTATACGGATCGTCACTGG 1560839 28 100.0 32 ............................ CGGCCCGGACGCACCGACAGCGGCCGTTGGTT 1560779 28 100.0 32 ............................ ACGGGTGACAAGCCCTTGAAAAATGCGACGGT 1560719 28 100.0 32 ............................ ATTAATAGTGCTCAATCTAGTGTTTGCATACG 1560659 28 100.0 32 ............................ CTCGTTTCTGCGTTCCCAGCCCCGAGGATTTG 1560599 28 100.0 32 ............................ AACAAATAGCGAAAACGGCTAATCTTTACAGT 1560539 28 100.0 32 ............................ TGCTTGGGAAGGTAACGCGCTGGAGGAGTTTC 1560479 28 100.0 32 ............................ TATGAGATTGGGGTGTTCTTCAATGCCCTTCA 1560419 28 100.0 32 ............................ AGAACGCCGGGATCACTGCACTACAAACGCTA 1560359 28 100.0 32 ............................ ATGAAAAGCACATTTCTTTTTTGATGGATAAC 1560299 28 96.4 32 .............T.............. ATCATATTCGCACTGGTTTCACAGCGTTTCGC 1560239 28 100.0 32 ............................ AAGTTCCGTACTGGGGCCACCGGGCAGGAATG 1560179 28 100.0 32 ............................ GTTTGGCCGCAGGAAGTTAATTTCCTGTTTGA 1560119 28 100.0 32 ............................ AGCAAGAACGTTGGGGGGCGACGCCCGAGGAA 1560059 28 96.4 32 ..........A................. GACCACGCTTACGATGAAATCACCGGCTTTCA 1559999 28 100.0 32 ............................ ATGCGCGCCAATGGCCTCCGTGATAATCTGCA 1559939 28 100.0 32 ............................ GCGACCAGGGCCGTGCTCTAAATCATGAAAGA 1559879 28 100.0 32 ............................ AGATACCACGCGCTCTGCGTAGCGAAATCCAT 1559819 28 100.0 32 ............................ AGTCACCGCCCCACTCGATCGGGATATGTAGC 1559759 28 100.0 32 ............................ AGCGGAAGATCTGCTGCTTGTTGTTGTGCCAT 1559699 28 100.0 32 ............................ GCAAAACATCGGCCTGTTTCCCGCCGCTGTTA 1559639 28 100.0 32 ............................ CATAACGGACAGTTGTTCATCCATTCCAACCC 1559579 28 100.0 32 ............................ ATTTTGGAATATTCCACTTTTGGCTCGGTGAG 1559519 28 100.0 32 ............................ TCGATCTGCTTAACGGCGTCACCCGGATGAAC 1559459 28 100.0 32 ............................ CGTCTTGGCGCCCATTTTGTGATTCTCCGGTG 1559399 28 100.0 32 ............................ TCTAACATGCTGGAGAGAGTGATGATTATACC 1559339 28 100.0 32 ............................ TTTAACTGCAATCTTGTTCAAAAGCGCACTCT 1559279 28 100.0 33 ............................ CTATGGCCGCCATTTCTATGCCGGTAATGCAAC 1559218 28 89.3 0 ....................A.A.A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCTTGGGCAAACTGGTCACCGAATGCTTGCGCAGCGTGGAGATGATCTACCTGACGCTGTCATTTATCACCACGCCGGTGTTTTACCTTTCCGGCACCATCTGGCCGTTGCAGGCGATGCCGCAGTGGGTCAGGGCGATTTCCTCAATGATCCCGTCAACCTGGGCCACCAAAGCCATCGCTGGCGTGAATCAGATGGGCCTCTCGTTGCGTGATGTCGGTGGAGATGTGGCAATGCTGCTGCTGCTGGGGGCGATTTATACGCTGATAGGCATTGGCGTTGGCGCCGTACGCAACCGCGTGGGGCTGCGCAGCTTATTCCGTCGGCATCGGGGATAGAATTGGCTCTCTTTACGCCATAAGCATGCGAACCCTTTTTTTTGCCGAGATAATATCTTACTGATTATTATCAGATTTTAAGGTGGGCAGTAAAAAAGGGTTTTCGCTGTATTTTGGCGATGTCTCTTCAATAATCATGCTGTTAGCGTTATTCTCTAAC # Right flank : TAATCACCCAGCAGAACAATAAAGCCCCAGGCCTTATTGCTCTGCAAAAGATAATTTATTGCACCAACTCCAACCCGGCCACGCGCCGCCAGTAACCATTGCATTCGGCGTGGTGGGCTAATGCCAACGGCTGTGCCCCTTGCTCGTTAGCGCGGAAACTATCAATTAACGCCAGAGTATCTTCCCCCTGCGGCGACAGGCGCACGATATCAACCAGCCCCTGCATGCTGGTCAGTTCGTTACCCAGGTTGTAGCAGTAACCGCTCATGGTCTGAATGCCATTGAGTACGAACACCTGCTGGTTCTCCTGCGAGTTAACGATGCGTCCCTGAGGATATTTGATACAACAGGTCTCGCATTCGTCCTTACCTCGGTTTTCTGAGCGGGCGGTAAAGCAACGCGCCGAATAGGCCAAGGGCAAATGACCATAGCTCAACACTTCCACTTCAAACCCCTGGCGGAAGCCCAACTCCTCGCATTGCTGCAATAAATTGACCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //