Array 1 70289-68341 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXP01000110.1 Acinetobacter baumannii strain MCR54 NODE_22_length_226576_cov_17.118332, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 70288 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 70228 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 70168 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 70108 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 70048 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 69988 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 69928 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 69868 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 69808 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 69748 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 69688 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 69629 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 69569 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 69509 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 69449 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 69389 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 69329 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 69269 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 69209 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 69149 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 69089 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 69029 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 68969 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 68909 29 82.8 31 ..CGC........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA 68849 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 68789 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 68729 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 68669 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 68609 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 68549 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 68489 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 68429 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 68370 29 82.8 0 .G..G...................AT..T | C [68365] ========== ====== ====== ====== ============================= =============================== ================== 33 29 92.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACACAAATATTAAATTATTGATTTTATAATTACTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCATGTCCGACTGTAGGACTTGAACTCAGGACCTATTTTATCCATTTTTATCAAAATTAAAATTTTGGGCATCCACCCATTCTTTTATGTTAAACCACTTTTTTGCAATATTTTCTACCTTATCTTCATGCATTACATCATACATAAATTTACTCTTAGAAATATATCTGATGCACTTTAGACCAGTTTCATCATAAGTTTCTAACATAGCTAAGAAAGATCCGCCAAAATCAATATACACTGGACACTTTGCCTCTAGCCAAGTACTTCTAGGTTTTTTCCAATCAAATTGATAATGTCCAATA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75379-76487 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXP01000110.1 Acinetobacter baumannii strain MCR54 NODE_22_length_226576_cov_17.118332, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75379 28 100.0 32 ............................ TGGAACTGTTGCAGGTTATTGGACTACTTTTA 75439 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 75499 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 75559 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 75619 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 75679 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 75739 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 75799 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 75859 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 75920 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 75980 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 76040 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 76100 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 76160 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 76220 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 76280 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 76340 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 76400 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 76461 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //