Array 1 85192-86415 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFDB01000003.1 Neisseria meningitidis strain 2842STDY5881466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85192 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 85258 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 85324 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 85390 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 85456 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 85522 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 85588 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 85654 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 85720 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 85786 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 85852 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 85918 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 85984 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 86050 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 86116 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 86182 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 86248 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 86314 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 86380 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //