Array 1 36292-40308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPE01000005.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold31_1_size40363-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 36292 30 100.0 37 .............................. ATGATTGGCTTGGGGTTGGTGGCTTTGTCGAACTCGG 36359 30 100.0 35 .............................. TCAAACTGAGGGTGAGCTTCAGCACGCCTCATAAA 36424 30 100.0 38 .............................. CTTGCAAAAGAAATAAACAGAATGATTGGCGTAGAATG 36492 30 100.0 39 .............................. AAGATAATGATTACAGGTGTGTACGATACGCAAAAGAGA 36561 30 100.0 35 .............................. AGTTCAACGATCTCTCCACATGAAGGACATTTATG 36626 30 100.0 36 .............................. TCGTATGACTGCCTTGAATACCGTTCAACGTCATCC 36692 30 100.0 37 .............................. AATTTCAGTCGGATTTGTTTTAGTATTTTTTCACATG 36759 30 100.0 35 .............................. TTGTTATTTTTTTAAGGGGGTCTTTCAACTTCATT 36824 30 100.0 35 .............................. TTTTTGTTGCACAGAATGAACAATATCCCTGGATG 36889 30 100.0 38 .............................. ATCGCCGCCAGGGTTTGCCCAGGAAGTATTTTTCTCTC 36957 30 100.0 38 .............................. AAATCTTCAAATTCCTCCCTCAAGCGGACGTACCGAAA 37025 30 100.0 36 .............................. ATAGAGTGAGAGGGTTGCCTTTTCGATTTTCGCGCC 37091 30 100.0 36 .............................. TCATTGAGAAAGTGGTTAAATCTGCCGGAACATCCG 37157 30 100.0 38 .............................. AATTGCCGAAATAGTGGAGGTAATCATTTCTTTGTTAT 37225 30 100.0 32 .............................. ATTGGAAAAATTAAACAGGAAATAGCAGAACG 37287 30 100.0 36 .............................. CTTAATAAGCCCCCTGCCTGCGTCCCCTCGTCCTTA 37353 30 100.0 35 .............................. ATTGAATACAACAACTGGATAAGTGCGGCTTACTC 37418 30 100.0 36 .............................. GTTTATCGCCTTTGATGAACTTACTCAATTTTCGGA 37484 30 100.0 36 .............................. GTTTTCTGGTATTCGGGGGTTTTCGGGTCAGTCTGG 37550 30 100.0 38 .............................. GAGAATACCGGATAGAAGATAATTCAATAACCGAGAAA 37618 30 100.0 37 .............................. TCTATCACGTAATAAGTTCCCGACTGCGTTTCTGAAA 37685 30 100.0 35 .............................. CTGACCTGGTCAGGGGATAGAACAACAAAAGCCTC 37750 30 100.0 35 .............................. CTTTGATACTGCTGCGCCCCTGACAAGCGTGTAAT 37815 30 100.0 38 .............................. TTGGATTAATAGGAGAAGGCGCACCAATCCAAGTACAA 37883 30 100.0 36 .............................. TCCATAATACCAAAAAGTACATTATTTGACATTGAA 37949 30 100.0 39 .............................. ACAAAAGCATATAAAGCAGCTCATTTTGCTGCTTTTAAT 38018 30 100.0 46 .............................. ACATAATTGTAATGCTAGAATCTGTGACAAAGATTGTATACGGCTT 38094 30 100.0 40 .............................. TAAGTTTTTTATAATACTCAAGTGCGTAATCACAAATACA 38164 30 100.0 34 .............................. ATATACTAGACCCCTATATGCATACCAAACGCGG 38228 30 100.0 36 .............................. TTATATTGTGATTTACCAGATACCCAAGGGGACCGT 38294 30 100.0 36 .............................. CATTTAAAACTCATTGTTTTGGCTCCTTTGAACTTT 38360 30 100.0 36 .............................. TTTAATTGGTACGCTAAACAGGCGGACGTTGGAAAC 38426 30 100.0 36 .............................. GGTCCTCCGCGTTGAATCTTTGCGGGAATAGAGGTT 38492 30 100.0 36 .............................. AACAGCACCCCGTACCCTCTGCAATTATCGAATACG 38558 30 100.0 36 .............................. CTTGCAGGTACTAGAGCGGGGTTGATCGGGGTGAAG 38624 30 100.0 35 .............................. TAGTTATTCCACGCGCGGGCATCTGAGCCGCCGTC 38689 30 100.0 37 .............................. GTAGCTGATTCCTTCGAGATTACTGCCGATTTTGAAA 38756 30 100.0 38 .............................. TTTCTTCGGGTCATACTGCTTCATTGGTTCGGTCTGAC 38824 30 100.0 34 .............................. TGATCACATCATCTTCATTGAAAAATCCTTCATA 38888 30 100.0 36 .............................. GTTGTTCGCTTCGGGAGCAGTTGCAGCCGTCCAGCT 38954 30 100.0 37 .............................. TCAGGATATATAAGTATTATTTTTCCGTCCTCATTAC 39021 30 100.0 36 .............................. GTGATAGATTTCTATCTGTTTCGATTCTTGGATACT 39087 30 100.0 37 .............................. ACTATCCAGATCCCAGGACCCCAGGTTGAGACAATGT 39154 30 100.0 35 .............................. GTTCCGGCTGAAGCAATGCCCACCGAAAAAAGGAA 39219 30 100.0 35 .............................. TCTTCTTCTTCAGGGTCTTCGGCTGAAATGAGAGG 39284 30 100.0 36 .............................. TTGTCATGCTATAACCTCCTGAGCATAAGCTCCCTT 39350 30 100.0 39 .............................. GTCCGAGTGGATTGATCTGGGCCTCGTAGTTATCCAATC 39419 30 100.0 38 .............................. TGTGCTTTCTGTTGGAATTTCGGTGACATTTTCAGGGA 39487 30 100.0 35 .............................. TAGAACAAATGGCAGCCCCCGCAACACTTAACCCG 39552 30 100.0 36 .............................. CTAAGAAAAGAATACTCCGTCAGTGTTTTGAAAAGG 39618 30 100.0 36 .............................. ATCGGTGATTTCTTCTATAGCCTGAGAGTAGAGTTT 39684 30 100.0 38 .............................. TCCTTTGCGACAAAAGGTTTAGTCAGACTTATTTCAAA 39752 30 100.0 36 .............................. GAGAAAATGTTTCCTCGAGCCTCAACCGCGTATTTG 39818 30 100.0 35 .............................. CTAATATCTCAATTCGTGGTTGCCATATCCATGAC 39883 30 100.0 36 .............................. GGATCTTTCTCCGTGAGTGCCGGGTTGTCCTCCAGG 39949 30 100.0 34 .............................. TGACCTGAATTCTCCCTGAATTAACTTTAATATC 40013 30 100.0 36 .............................. CTTTAAATCCGGTAAAGGCCCGATGTGGCAGGCCGG 40079 30 100.0 37 .............................. TCCTTTGTACCTATGATAACGGATTAAACCGCCACAT 40146 30 100.0 37 .............................. AAATTCAGAAGCCAGGGTTACTGTTGGAGTCAAGAAA 40213 30 100.0 36 .............................. CTAAAAACTCCTCTTCTGACATCACCTCTCTTATTT 40279 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 61 30 100.0 36 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TATGAACTGGGTCCAAAATAGTGTTTTTGAAGGCGAACTCACAAGAGCCGAATTCGCAAAAGTTAAATCAAGGCTTAAAGAACTCATTGAAGAAAAATCTGATCACATCATTTTCTACAGCTCAAGAGATCGGAAATATCTTGGAATAGAAAATCTCGGAACCCCAAAAGCAGATACAAGCAATATCATTTAATTGCCTCGTCCATGAGTTTCATTACTTAGATCTTCATACTAGAATTAACACTTAATTTATATATTTCTCCCGTCTGCCTTTTTTGCAGTTCCTGTTTCTCCTCTTTTTTCGTGGATCTTTATATATGAACCTCCTGAAGCACGATCCCCGAAATCAGCTCTTAAAACCCTCTTAAAAAAAGAATGCTTTTATATCAACAGTGAACAAATACCATTGAATAAAAACAGTATCATTCCCCCGAATTATTTATCACCCATCTGACAGGATCAGGCATCCAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : TGACCTGAATTCTCCCTGAATTAACTTTAATATCGTTAAAATCAGACCTTAGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 16043-6772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPE01000028.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold10_1_size77834-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 16042 37 100.0 36 ..................................... AGAGTACATTTTCTAACGTTCTCACCTTTGAGAATC 15969 37 100.0 37 ..................................... ACACTATAAAATCAGCCGGAACGAAAGCTAAAGTATC 15895 37 100.0 35 ..................................... CAAAGTCCCCCGTAGGATGTACGAATCTTGGAAAG 15823 37 100.0 35 ..................................... CTTCTCGATCGTCATTAAAGGGATCTTCGCAAATG 15751 37 100.0 35 ..................................... AGAAAGTAAAATGCTTATCCAGCCGTACCTGAATA 15679 37 100.0 34 ..................................... CAGCCGGATACACTGTTACAGGCTCCGTTTCCGA 15608 37 100.0 34 ..................................... TTACGCCCTGGGAGATTTCGTATTTATCAACTAC 15537 37 100.0 35 ..................................... TATACTGCATCCGAAACAATGTTAATAAGAATTGA 15465 37 100.0 35 ..................................... TTCCAAGATCCAAAACTAGACCCGGCTGATACCGG 15393 37 100.0 36 ..................................... TTTTATACCCTGGAAATGGGCTGATCTACTACGGGC 15320 37 100.0 34 ..................................... CACTGTTGGAAGAACTTGTCAAACAAGGAATTCT 15249 37 100.0 37 ..................................... TTAACACCGTACCGCTCAGCCCTGAAGTTCAGGTCAG 15175 37 100.0 35 ..................................... GTGATTGCTGTAACTGAGGGGAACCACACTGTTGC 15103 37 100.0 38 ..................................... CAAACTCTTCAGAGCCATCAGGATAGATTCTAAGCACT 15028 37 100.0 37 ..................................... CATATATGCATTCCTAACCCATGCCATAACAAAAACT 14954 37 100.0 35 ..................................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 14882 37 100.0 38 ..................................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 14807 37 100.0 41 ..................................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 14729 37 100.0 39 ..................................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 14653 37 100.0 35 ..................................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 14581 37 100.0 36 ..................................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 14508 37 100.0 35 ..................................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 14436 37 100.0 36 ..................................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 14363 37 100.0 38 ..................................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 14288 37 100.0 35 ..................................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 14216 37 100.0 35 ..................................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 14144 37 100.0 34 ..................................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 14073 37 100.0 35 ..................................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 14001 37 100.0 37 ..................................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 13927 37 100.0 35 ..................................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 13855 37 100.0 37 ..................................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 13781 37 100.0 34 ..................................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 13710 37 100.0 35 ..................................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 13638 37 100.0 36 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 13565 37 100.0 36 ..................................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 13492 37 100.0 36 ..................................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 13419 37 100.0 36 ..................................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 13346 37 100.0 37 ..................................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 13272 37 100.0 35 ..................................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 13200 37 100.0 35 ..................................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 13128 37 100.0 33 ..................................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 13058 37 100.0 35 ..................................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 12986 37 100.0 34 ..................................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 12915 37 100.0 38 ..................................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 12840 37 100.0 36 ..................................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 12767 37 100.0 34 ..................................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 12696 37 100.0 37 ..................................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 12622 37 100.0 35 ..................................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 12550 37 100.0 37 ..................................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 12476 37 100.0 35 ..................................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 12404 37 100.0 36 ..................................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 12331 37 100.0 35 ..................................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 12259 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 12187 37 100.0 36 ..................................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 12114 37 100.0 35 ..................................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 12042 37 100.0 35 ..................................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 11970 37 100.0 35 ..................................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 11898 37 100.0 35 ..................................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 11826 37 100.0 35 ..................................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 11754 37 100.0 34 ..................................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 11683 37 100.0 34 ..................................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 11612 37 100.0 34 ..................................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 11541 37 100.0 37 ..................................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 11467 37 97.3 35 .....A............................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 11395 37 97.3 34 .....A............................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 11324 37 97.3 36 .....A............................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 11251 37 97.3 35 .....A............................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 11179 37 97.3 35 .....A............................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 11107 37 97.3 35 .....A............................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 11035 37 97.3 34 .....A............................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 10964 37 97.3 37 .....A............................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 10890 37 97.3 35 .....A............................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 10818 37 97.3 38 .....A............................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 10743 37 97.3 37 .....A............................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 10669 37 97.3 33 .....A............................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 10599 37 97.3 35 .....A............................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 10527 37 97.3 35 .....A............................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 10455 37 97.3 35 .....A............................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 10383 37 97.3 35 .....A............................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 10311 37 97.3 34 .....A............................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 10240 37 97.3 36 .....A............................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 10167 37 97.3 36 .....A............................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 10094 37 97.3 35 .....A............................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 10022 37 97.3 35 .....A............................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 9950 37 97.3 34 .....A............................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 9879 37 97.3 35 .....A............................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 9807 37 97.3 32 .....A............................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 9738 37 97.3 34 .....A............................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 9667 37 97.3 35 .....A............................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 9595 37 97.3 37 .....A............................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 9521 37 97.3 36 .....A............................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 9448 37 97.3 34 .....A............................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 9377 37 97.3 36 .....A............................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 9304 37 97.3 32 .....A............................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 9235 37 97.3 35 .....A............................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 9163 37 97.3 34 .....A............................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 9092 37 97.3 34 .....A............................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 9021 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 8950 37 100.0 35 ..................................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 8878 37 100.0 37 ..................................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 8804 37 100.0 33 ..................................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 8734 37 100.0 35 ..................................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 8662 37 97.3 34 .....A............................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 8591 37 97.3 36 .....A............................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 8518 37 97.3 35 .....A............................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 8446 37 97.3 35 .....A............................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 8374 37 97.3 34 .....A............................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 8303 37 97.3 36 .....A............................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 8230 37 97.3 35 .....A............................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 8158 37 97.3 36 .....A............................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 8085 37 97.3 34 .....A............................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 8014 37 97.3 36 .....A............................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 7941 37 97.3 34 .....A............................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 7870 37 97.3 37 .....A............................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 7796 37 97.3 35 .....A............................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 7724 37 97.3 34 .....A............................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 7653 37 97.3 43 .....A............................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 7573 37 97.3 32 .....A............................... TTATCAGCGTGGATATAATACTTATATTTCTT 7504 37 97.3 37 .....A............................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 7430 37 97.3 36 .....A............................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 7357 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 7282 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 7207 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 7136 37 91.9 0 .....A.............................GT - Deletion [7100] 7098 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 7028 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [7013] 6955 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [6940] 6883 37 81.1 36 GG...A..AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [6868] 6809 37 78.4 0 TG...A..AGT..C......................G | T [6793] ========== ====== ====== ====== ===================================== =========================================== ================== 129 37 98.0 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 12189-11907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPE01000142.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold95_1_size12189-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================================================================== ================== 12188 25 100.0 39 ......................... ATTGAACTATTACGGCATTTTGAAGGACAGGAGGGTTAA 12124 25 100.0 41 ......................... AGGAATACACCGGATAAACTGCCTGCAATGAATACAGTTAA 12058 25 100.0 101 ......................... GTGCTTAGGAAAACCCTTGTATATAAACATCTTTAAATTTGTGGGAGAAAAATTAATAAAAGGAAATTAAAAAGTTATATACTATTAGAAAAATGTAATAG 11932 25 88.0 0 .....CT.................A | T [11931] ========== ====== ====== ====== ========================= ===================================================================================================== ================== 4 25 97.0 61 AATCAGACCTTAGAGGGATTGAAAC # Left flank : | # Right flank : TTTGGAGTTCGTAATTTCAATTTATTAATAAGACCTTTTAGGGATCATTTATTTTTTTTACATTTTATTTGGGAAATAATGACTTACCGTTTGGAGTTCGCAATTAGGAAAGATTTATCTATTTGAAATGCTTTATACTCTATAACTCATTAAGAAAAACGGGAAATGTAAATACAAAATTTAAATAATAGTCAGGGAACAAGTTATGGATCAAACAAATCCCGTTGAATTGACATTATTGTTTTTGAGAATACTGGAATTTCTGCAACAAAAAGCCTATATCCGAAAGACGGACAAAAAAACAATCCTTGGTAATGGAAAGAAAGTTATCTGGAGGTTAAATATTGATATATCAGTATACAGGGAACCCGTTCGTCGATAATGGTATGTGGGCAATTTGCGAATGGGCAGAAAAGAAAGACCCAAAGGAACTTGGAATTGAGGACATAAAGGAAAGTATTTCCGATATTATTCCAATTTATTTAACAGAATCTTGGGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-2.64, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 2464-2792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPE01000138.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold125_1_size7362-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2464 37 59.5 36 TGGTCTCC.TCTTTA.A.................... TTAAGATGACCAGCGATCACAGTTTTCGTCTCTGCC 2537 37 78.4 35 .G..G...GT.GCT.....G................. CTATTTCCCTATACCTTTCTCACTCAAAACCATTA G [2546] 2610 37 100.0 35 ..................................... TCAGAAAGTTCCTGCATCGAGTCTACCCATGCATT 2682 37 86.5 37 ....GC..G...................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 2756 37 81.1 0 ....G.T.A.........T........A.....T..T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 81.1 36 ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATAGGTCAAACAATTAGAGCAATAAGATATCATTTAGGTGAGTTAGAAGCATGTTGGTTACTGTGTACAAGAGAAACAAAAGAGAGTGAAGAGCTAATAAATTACTTTATAAGAAAATTCTCTAAGAAAACGGTAGACATCCAATCAATCGAATTAATAAATTCTTCAAAAATTGGTGATACTTTTAAACAAATAAATGAGATATATATAGAAAAAATAAAAGGAGTTGGTTTAAAAGAAGGAGAGGTCATAGCAGATTTGACAGGAGGAACCGCGGTTACGAGCTGTGCGATGGTTCTTGCCTGTGTACCTATAAAAAGAGACATGGAATATGTTCTTCAAAGTACATATGATCTAATAAAAATAAAAGAAAATATCTCTGAAATAGTATTTGATAGATAATTGTTAAACAGTTAAGTTCGAAGTTGCTTAGAATTGGCTAAAAATAAGAAAGATAACTCTTTAAGAAATAGTTGCCACGAAATAAATAGTGAGATGCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.05, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7583-12935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPE01000147.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold90_1_size12997-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 7583 37 97.3 36 .....T............................... CTAGTATAAAAAAGTTTTGAGTAGAGAAGACTTAAT 7656 37 97.3 37 .....T............................... ATTTCTCCACCCTGTAACGTTGTTGCACCTGCAAATT 7730 37 97.3 37 .....T............................... ATGTCTTAAATCGCCTTAGATTTGTTCGTACTTATTA 7804 37 97.3 34 .....T............................... TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7875 37 97.3 38 .....T............................... GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7950 37 97.3 35 .....T............................... ACCTCATTGCAGATAAATGATTTAGCCCTGTAGAG 8022 37 97.3 37 .....T............................... GGGTATGAAATTGACCAGGAAATCCACAATGTTGTTG 8096 37 97.3 38 .....T............................... TTTATAGAATTACATACATAAGTGAGTGTAGCGAACGT 8171 37 97.3 35 .....T............................... TAACAGTCCTCTATCTGGTTGTTTTCAAAAATCGT 8243 37 97.3 36 .....T............................... TAAAAAATACACTCGAATGCATCAAATTATACTGAG 8316 37 97.3 36 .....T............................... TGGTGGAAAGGAAGTTGCAAAAAAACTTGGAATTGG 8389 37 97.3 36 .....T............................... GCTACGATTTCACTATACAATTCCTCTACAGTCTGC 8462 37 97.3 33 .....T............................... TTATGATGAGTGTGAGACAAAAACGGATACTGC 8532 37 100.0 35 ..................................... ATTTATTACTTCCCATTCCTCAGAAAACAGTTCAA 8604 37 100.0 38 ..................................... TAAACCAGTCCCGCGATTACAAGCATCGAAATGATACA 8679 37 100.0 36 ..................................... CGAAGTTAAATGATGGTGGGTTGAAGTTTGACGGTG 8752 37 100.0 37 ..................................... TCCATATGCCCCATCTGTGCGCATATAATCGCATATT 8826 37 100.0 34 ..................................... CTACACTCTGTGCGTTTGCGCTTGTTAAATTCGC 8897 37 100.0 37 ..................................... AGATACGCTGCCCAAGAAGCCCCACCTGCCCCTGCAG 8971 37 100.0 37 ..................................... AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 9045 37 100.0 37 ..................................... AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 9119 37 100.0 37 ..................................... TAAGCTACTATTTTACCTTGTCTGACTAAATCTGCAT 9193 37 100.0 35 ..................................... TTCAATGATCTCTACTTTTGCCGGGAAAGATTCGT 9265 37 100.0 36 ..................................... AAAAGCGACTTGCATATACTACAGAGCCGGTTCCGG 9338 37 100.0 36 ..................................... TAATTTCATCATGCCCACAGGTTGCAATGGTGTCAA 9411 37 100.0 35 ..................................... TGGCCTCGATCTCTGCTGTAGACCCCTTTTCCTCT 9483 37 100.0 38 ..................................... TAACCGGCATACAGAGCCATTATTAATTGTACCAAAAA 9558 37 100.0 33 ..................................... CAGGGGCGAATTCGTCTTTTACCGTCGGGACAA 9628 37 100.0 36 ..................................... TGCAAGTAAATTACGGTGGAAGTGTTGCAGTTTCTA 9701 37 100.0 34 ..................................... TGACTGAGAGACAGAGGAACGAAATTAGAAAAAG 9772 37 100.0 35 ..................................... GGATTTATCAAGGCGTTAACAGATACAATATCCAT 9844 37 100.0 37 ..................................... TTAATTTCGCGTATATCGTCTATAAAACTTTTCACAT 9918 37 100.0 37 ..................................... AAGGTTTATCTTTTTCCTCAATGTTTCAAAATGTTTT 9992 37 100.0 37 ..................................... TCCTTGGCTACTTCAAATTCAGTTTGTAGTTTATTAA 10066 37 100.0 37 ..................................... AAAACGTTATCCCACTTTTCTTTGGTGATTCCATAGG 10140 37 100.0 38 ..................................... TCAATCACACATTCTTTAAAGTCTTCTATCGTAACTTT 10215 37 100.0 36 ..................................... TAAAGTTAGATGTACGTGGCGCATAAGATACACTTC 10288 37 100.0 36 ..................................... GTTTTATAGTTGTTACTACTATAATAATCACCTCTA 10361 37 100.0 38 ..................................... TTCATTCCTCGAAGCTACAAACACAACAAATCTAAATT 10436 37 100.0 36 ..................................... CCTCGCTCTTGCCGGATGGGACGTAAATGAAATCAT 10509 37 100.0 37 ..................................... AAAACTCCTGCTTCAATCTGTTCGGGGGTTGCTACGT 10583 37 100.0 38 ..................................... CCTCGTTTCTTTTTTTTGAAAATCCCAGATTATGACGT 10658 37 100.0 34 ..................................... TTCTCAGGGAGCGCGGAGGCACAGCGAGAAGACC 10729 37 100.0 34 ..................................... TTAAGAAGTCTGAACCTGTGGAGCAGTTGAAAAA 10800 37 100.0 33 ..................................... AAATTGGCGATTTCTTTAGAGTTAAAGGTAAGA 10870 37 100.0 37 ..................................... ACATAGTCATACATGCTGTCATAGAGGTTCACGTATC 10944 37 100.0 34 ..................................... TAGCTATCTTAGCTATCTTTTCGGCTCGTTGGAA 11015 37 100.0 36 ..................................... CATTCAACGATATTTACAAGCCTAGTGTAATCCCCT 11088 37 100.0 35 ..................................... AACCTTCTACAAGATAATCCAGCCACATTTTTTTA 11160 37 100.0 34 ..................................... CCACCTTGTAGGTAATAATCTTTCCGATTACTAC 11231 37 100.0 35 ..................................... TTCCAAGAGCCGTGTAACTGCATGTTGCGGCTTTC 11303 37 100.0 33 ..................................... TCCCTCCTTAAGTTGTCACCGTTCCGAGTCCAA 11373 37 100.0 36 ..................................... TTAAAAAAATGTTCTTTCTTGCAAATCCGGTTAACT 11446 37 100.0 37 ..................................... GTTCTCCTGATTCGTTATCTATGCGATGTAATACACA 11520 37 100.0 37 ..................................... TTATGGTGATCCAGAGAAGGATATTCCGGCGAAAGAG 11594 37 100.0 36 ..................................... TATTCATGCTTCAACTTCCTGCGTTCCCTTGCTCCA 11667 37 100.0 36 ..................................... ACCCTGGGTCTTCTGAATGGTACTGGACAGGTTCAG 11740 37 100.0 36 ..................................... GCATCATCGTTTCCGGACCCGAGAGATATGATATCC 11813 37 100.0 36 ..................................... TTCACCATATTTGATAAAAATACGTTAGTATGTTAA 11886 37 100.0 37 ..................................... ATGCCAGTGTTGCAGCTTCCGTGCGGGTTTGTGTTGA 11960 37 100.0 36 ..................................... AAACACAATTGAAGTTATTCCTATCGCTATATTCTA 12033 37 100.0 37 ..................................... CAGGAAAAGGTATCCGAAATACAGGTATTACAGGTAG 12107 37 100.0 33 ..................................... CATAACAAATTCGATATTCATCTCTCGATACTT 12177 37 100.0 34 ..................................... TGATAGGCATATAATTGATGTTTTGATAGAAAAG 12248 37 100.0 34 ..................................... TATAGAATTGTAATTGCAACAGACGATGAAACAC 12319 37 100.0 37 ..................................... TCCGTTATTGCCTCGTTTTTACCAATTATCCCTTTTA 12393 37 100.0 36 ..................................... AGATCGTACTGTAACTGCTTTACCAAATCGTCAAGG 12466 37 100.0 34 ..................................... AATTACCTATATTTCCACTCCAAAATCTGGTCTA 12537 37 97.3 35 .....T............................... AAGTGGATACATGCCCCACATGACCCCATTGAACC 12609 37 97.3 34 .....T............................... TTTCGACTTCCCATCTCCTGCTCCTGATGTCAAA 12680 37 97.3 36 .....T............................... CGGGACTCTGAGGTGATCAAGAATGACAAATGCACT 12753 37 97.3 36 .....T............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 12826 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [12831] 12898 37 81.1 0 .G...A...T.GCT......................G | A [12905] ========== ====== ====== ====== ===================================== ====================================== ================== 74 37 98.9 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CAAGGATTGAAACCCCGGAAGGCTCCCTGCATGACCACAGGGACGATGAATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAACCATCCACGAAAGAAGCTTCAGAAGGTACGTATCAATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAACCTGTCGATATATACGGGAAAAAAACGGCTACCACTAATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAACAGCTTATATTCCTCGTATTCACATCCCCATTTCTCATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAACCATGAGGGAAGCGGACGAGGTTAAATATCTGAATGGATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACTTAAAGCTGACCATGCATTATCAAGTTCTGTTTGATTCGTGAGCAAGATCCANNNNNNNNNNNNNNNNNNNNNACAAGGATTGAAACGAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //