Array 1 965817-967432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039445.1 Salmonella enterica subsp. enterica serovar Infantis strain VNSEC001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 965817 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 965879 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 965940 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 966001 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 966062 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 966123 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 966184 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 966245 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 966306 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 966367 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 966428 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 966489 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 966550 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 966611 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 966672 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 966733 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 966794 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 966855 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 966917 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 966978 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 967039 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 967100 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 967161 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 967222 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 967283 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 967344 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 967405 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 983715-985612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039445.1 Salmonella enterica subsp. enterica serovar Infantis strain VNSEC001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 983715 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 983776 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 983837 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 983898 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 983960 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 984021 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 984082 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 984143 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 984204 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 984265 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 984326 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 984387 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 984448 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 984509 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 984570 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 984631 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 984692 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 984753 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 984814 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 984875 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 984933 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 984994 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 985055 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 985116 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 985177 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 985238 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 985299 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 985360 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 985461 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 985522 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 985583 29 93.1 0 A...........T................ | A [985609] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //