Array 1 3699383-3704612 **** Predicted by CRISPRDetect 2.4 *** >NC_015677.1 Ramlibacter tataouinensis TTB310, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3699383 32 100.0 37 ................................ CTCTGAGGTCACACGCCAAAATCGGCGCAATTGAATT 3699452 32 100.0 36 ................................ CCGCACGAAAGCGGCGCAGCAAGAGCTTGCTACGGA 3699520 32 100.0 35 ................................ ACGCTGTTCCAGTTGCGCCTGACTTTCGGCAACCC 3699587 32 100.0 36 ................................ CACATAGACAGGCGCTGAGGCGTTATTCAGGACAGT 3699655 32 100.0 35 ................................ TGGAGCGCGGCGTCGCCCTGCCCGTGCCCACGGAC 3699722 32 100.0 33 ................................ TTGTACCCCCCGGGCACCAGCACGCCGATCGGG 3699787 32 100.0 34 ................................ GTGGATGGGAACGCCCACAGGCTGCAGGCCTGGC 3699853 32 100.0 35 ................................ TCGTCCTGGTAGTTGCGGTCCAGTTCCGCGTCGTC 3699920 32 100.0 34 ................................ CTTGATCAGGTACTTGTCGCACCAGCTCTTGGTG 3699986 32 100.0 35 ................................ CACTCCTGCCGCGCCAGGAACGCGGAACGCGGCTC 3700053 32 100.0 34 ................................ CTGAATCCACACGAGCAACCGGCTTCCCGGTCAC 3700119 32 100.0 34 ................................ TCTGCCGTGTAGGGGCGCAGCTCGCACACCCCCG 3700185 32 100.0 35 ................................ AGTCCTTGCTACGACGTTGGGGTTGATGAGATTGG 3700252 32 100.0 36 ................................ TCCAGCTCGTCGCGGACGTCGTCAGCCAGGCCCCCG 3700320 32 100.0 35 ................................ AGTTCACGTGGTGCCGGCCAGTCGGGCAGCGCACT 3700387 32 100.0 35 ................................ AAGCGGTGGCCCGCTGCCCGGCGTGTCGCGCTCTC 3700454 32 100.0 35 ................................ GTTGTAAAGCTGGATCATGGCATAGGCCACGCCGC 3700521 32 100.0 33 ................................ CACAGCTCCGAAAGGCGCGAGCTCGAACCGCTT 3700586 32 100.0 36 ................................ ATGTCGGCGTTCGGGTCGATCCAGTCCCAGCGGCGC 3700654 32 100.0 33 ................................ TCTACCTGCACACGGCGGACGATAATTTTCTTA 3700719 32 100.0 35 ................................ GAAGCCCTGGAGCCGCCACAGTAGGCGAAGCCCGC 3700786 32 100.0 37 ................................ AACGACCTGGGCTAACCCATGCTGGACGCGGCGCAGG 3700855 32 100.0 35 ................................ CCGGCGCCGACACACCGTGCCCGTCTGAGGGGCTT 3700922 32 100.0 38 ................................ CGCAGCAGCCCCACCATGGGCGCCATGGAGAGCCTGCC 3700992 32 100.0 36 ................................ GAATTCATGCAGAGGGATGATGGCGCGGCCCGTGGG 3701060 32 100.0 35 ................................ TGCCGTGTCATTTTCAAGGCGTAAATCCACTCTCG 3701127 32 100.0 36 ................................ GCAAAACAACTCAGGCGTCACAACTCAACACCGGTT 3701195 32 100.0 36 ................................ GCTGAGAGGCTCGGTTACGGATCAAGAATTGACCTT 3701263 32 100.0 36 ................................ CTGCGGTGTCAGGTCTTCGATGGGCAGGGGCGTGCT 3701331 32 100.0 36 ................................ ACGGACAGCGCCGGGATGCCCGCTTGCCACAGCGTC 3701399 32 100.0 34 ................................ GCTTGCGCCTTGCTAGCAGCCGCTAGCGGCTTGC 3701465 32 100.0 35 ................................ GACGTAGCCGCTGTCGTCCCAACGGCCGCTGAAGA 3701532 32 100.0 34 ................................ CCGCCGTAGTACGCGATGGCTTCTGACTTGGTCA 3701598 32 100.0 34 ................................ TGCGCGGCGAACGAATCGGGCGCCATGCACTCGA 3701664 32 100.0 34 ................................ CTTCACTCCTACAACCGAGTTATCCACCGCCCAT 3701730 32 100.0 35 ................................ AGCTCCAGTGCACATGGCTCAGACCCTCCGCACTT 3701797 32 100.0 35 ................................ GCGCAGGCGCTGCTCGGCCTCGCGGCGAGCCTCGG 3701864 32 100.0 36 ................................ CTCCTGAGCGACGTGCGCCGCTGGGGGCCGTGGGAC 3701932 32 100.0 34 ................................ TCGACGAGGACGTGCTCGTTGCCGCTCACAGCGA 3701998 32 100.0 34 ................................ CTCCTGAGCGACGTGCGCCGCTGGGGGCCGTGGG 3702064 32 100.0 34 ................................ TTGACGCCCACTCCCCGCAGCACCACCGGCTTGC 3702130 32 100.0 36 ................................ GCCATGCCATCCCCCGCCCCCAGCTCGGCGCCCGCC 3702198 32 100.0 35 ................................ AAGCGTGAATTCGCGTTGCAGTTGCTGGCGGACGC 3702265 32 100.0 35 ................................ CGACGGCGTTCTAGCGGTTCTTATTTTTGTGGCGC 3702332 32 100.0 36 ................................ ACCGGCAACGTGCGCGTGCCGGACGTCACGCCTGGC 3702400 32 100.0 35 ................................ GTCAGCGTAGGCAACGACAAGGTTAGGCATGTGGG 3702467 32 100.0 34 ................................ CGCCGGCTGCGCCCTGGCCAGCTGCGCGGCCTGC 3702533 32 100.0 36 ................................ TGATCCATGCTGGTCAACAGCGAGCGCAGCGCGCTT 3702601 32 100.0 34 ................................ GGCGGCGGTGCCTTCGGCGCGAAAGCGCTGTTGC 3702667 32 100.0 34 ................................ GACACCGGCGAGCTGGCCATGCTGTGGGACGTGC 3702733 32 100.0 34 ................................ CCTGCGGGGGCGTCAGGAACATGGAACCGGTGAG 3702799 32 100.0 34 ................................ CACTCGAGGCCGTCGCTTCCGACACTTCTTCAAC 3702865 32 100.0 33 ................................ CGTTCCGGTCCGGCGCAAGCCCGGCCACCTGGT 3702930 32 100.0 35 ................................ ACGCTGCGCTATCCGGCCGACCGCGCCGCGATGGC 3702997 32 96.9 35 ........................A....... CCGTACGTACGGGAGCGGGAGCCGGGACGGGGGTG 3703064 32 100.0 35 ................................ GCGGGCCAGAACGGCCAGACCTACGCGGCCGGCGC 3703131 32 96.9 36 ....................A........... TCGATGTCGTAGCCGGCCTTTTCCTTTGCCGCCCAG 3703199 32 100.0 35 ................................ TTTGCCGATGTATTCCCCTCCAGCCGATCCTTGCG 3703266 32 100.0 35 ................................ ATAAAGCCCGACAATGATCGGCAAGTGTTTTTCTA 3703333 32 100.0 34 ................................ AACAGCGCGAAGACGCTGCCCCAGGTGATCGACG 3703399 32 100.0 34 ................................ ACGTCCGCCTGCAGCGCAAGGATCTTGAACTCGG 3703465 32 100.0 35 ................................ TCGGCCAGGGTGACTTTGCTGTGGTTGCGCGCCAC 3703532 32 100.0 36 ................................ GAGCGCACCGGGGGCGAGCTGCTCACGGCCAACGAG 3703600 32 100.0 38 ................................ GGGGGCATGTGGTCGAGCTGCAGCACCAGCAGGCAGGA 3703670 32 100.0 35 ................................ ACCGAGCCCGAGCCGGCCAGGGACCAGCTCACGAC 3703737 32 100.0 35 ................................ ATGGAGCTATGCACGCCCCCCCAGCCCGACCGAGG 3703804 32 100.0 34 ................................ CACTTCAAGACGTCTAGCAATGATTTTCTTTCCA 3703870 32 100.0 35 ................................ ATCACCGGCTCGGGCAGCGCGCCCGCAAGCTCGGT 3703937 32 96.9 34 ..................A............. ATTTGCCCCACCCCAGGGGGTGGAAACGGGTTGC 3704003 32 100.0 35 ................................ GATAACGCGCCGATGCAGCGCGGCCTGCTGGACGT 3704070 31 96.9 16 ................-............... GTCTACCTGGTGGCCG Deletion [3704117] 3704117 32 90.6 36 .CG..A.......................... TTCTTCCTTGGCCCTGGTGGCACGCTCGGCCGCCTT GG [3704125] 3704187 32 93.8 35 .....T......A................... ATGCCGTGCAGCACCACGCTGCGCGGGCTCTTGAG 3704254 32 100.0 34 ................................ ACCTTCGGCGGGTGGCAGCCCACATAGGCGTCGC 3704320 32 96.9 33 ........T....................... GTAGTGGGCGCGGAGGCGCAGCGGATCCTGGGG G [3704337] 3704386 32 90.6 33 ........T...A..................T CACGTAGCGGGCATGGTCCGGGAACGGCGGCAG 3704451 31 78.1 33 A..........T........A.A..-....CA TCAACTCCAAGGAGACCTTAGTACGGTACGTTG 3704515 30 84.4 36 ......-.T.....A..T....-......... GATTATCGAAATGTCTGGCAGCAGGAGTACCAAGCC 3704581 32 78.1 0 ....T....T.A......T.A...AC...... | ========== ====== ====== ====== ================================ ====================================== ================== 79 32 98.7 35 GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC # Left flank : CGCCCTTTCTCTGGAAGTAGGAGGCCCTCATGATGGTACTGGTGAGCTACGACGTGCGAACGCTGGATCAAGCAGGGGCTCGCAGGTTGCGCCGCATCGCGAAAGTCTGCCAAGATTTTGGCCAGCGAGTGCAGCTCTCGGTATTTGAGATCGAGATCGACAGCGCCAAGTGGGTTGCCGTGCAGAACGAATTGTGCTCCTTGATAGATCCGGCCACGGACAGCCTGCGCTTCTACTACCTGGGTAAGAACTGGCAGCACAAGATAGAGCACGTTGGCGCCAAGCCAGCGCTGGACTTGAACGCTCCGCTCATTCTGTAGGTTCGCGCGAACCTTGATCGTTTGCGTGTCGTCTTTGGGGTTCGCGTTCCCCTAAGCTCTTGATAAGTCCAGAATTTTTCAACCAAGCGTGAGTTAACGCTTTGTTTTCAGGCGTGGCTGCACCCGCTTCGCAGAAACGCGCAGAAAACTGGATGTAAATCATGAGGGTATAAAGGCGCC # Right flank : CGGCGATGACTGGAACTGGGCGGCATAGGGTCGAGGCTCGCGGGGCTTCTAGGTTGAATGCCGTTGCCGAGTTCGTGGCCAGCGAAACCGGTGATGGCGTCCGTACGGGGGCGCGGGTTGAAATTGGGACATGAACCGAATTCACCAGCGCCGGGTATAGCGTCGCGCCTACGCGGTGCTTGGATGGAAACAGCGCTTGCGGCACTACGGACGGCAAGATGTGTAGAGGCGTGCCTCACGCGGACGCGTGGGTTAAACCATCTGCGCAGAGTCGTTCATCAGCCTACTGTCACGCACACAACGGAAGAGCTCAGGGCGCGATCTGGTCCGCCGCCGAAGCCGGCGGTCGGGCACCGGCCTGCGGCACCACCGGCGCTGTGGACGGCCGGTTGGGGTCGTACAGCACGGTGCCGGTGCCCACGCCCACGCCGGCGCGGACCGGGCCGCCGCCCACGGGGACGCTGGCGCCCACGCCCGCGCCGCCGATCACCTGGCCGCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.60,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-56] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //