Array 1 2128699-2127739 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AZSJ01000003.1 Afipia sp. P52-10 contig000003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2128698	    36	  75.0	    30	ACAC..T..C.GT...A...................	GATCGCACTGTTGAACAACTTCGACGCAAA	C [2128688]
   2128631	    36	 100.0	    30	....................................	GAAGCCTGGTGTCCTCATCGCGTATCTCGG	
   2128565	    36	 100.0	    30	....................................	GCAGATAAGAAGACCCTCGTCGTGTTCCAT	
   2128499	    36	 100.0	    30	....................................	CCGCAGCAACAAGCGGCGCGGTGCCAACAA	
   2128433	    36	 100.0	    30	....................................	AATGCGATGATCACATCCAACGTGAAAATT	
   2128367	    36	 100.0	    30	....................................	CGACCTGGAGCGCTCAGCAAGCGTGTCTTT	
   2128301	    36	 100.0	    30	....................................	TCCATCCGAGATTGAGCAGGTGCTCGCATC	
   2128235	    36	 100.0	    29	....................................	CGATATCTGGTTTTACGAACAGCCTGCGC 	
   2128170	    36	 100.0	    30	....................................	AAGCCGGCGCTCGATGTGCTCGACACCGCG	
   2128104	    36	 100.0	    30	....................................	TTCGCGCTGATATGCTTGAAGTCTTCTGCC	
   2128038	    36	 100.0	    30	....................................	GCCGCTCGGACCCTCGCCTCTTGCAAAACG	
   2127972	    36	 100.0	    30	....................................	GATAAAGATGGGATCGAACTGCGAGACTGT	
   2127906	    36	 100.0	    30	....................................	TTGCCGGAGGCCAGCCCGCGATTGCGGTGA	
   2127840	    36	 100.0	    30	....................................	GCCTCCTGGAAGGCCTCTTCTGCGCTTGTC	
   2127774	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	  98.3	    30	GTTGCCGCTAGACCACGATCTCTAACTAGCTATTCT	                              	       

# Left flank :   AGTCGCGAGAGCCCATGGCTGGCTTCACACCGGCGCACGCATCCGCGATCAAATTACCCATCATCTAAAGGAACTGGAAGGAACTGGATCGCACCGAGGAAGCATCCGGAACATTCCTTTGGAAGCCTGGCACCGTCAGTTCACGTGTGCCATTTCGAAAGCCGCAAGGTTTGCGGCATCGACGGAACCACGGGGGGATTGCTGTGGCCGAGCTCACCGACTTCGTGCTCTCCAACCCCATCGTCTTGGACGAAGATGATCCACCGTTGAAATATGCCCGTCTTCTGCAAGTCGAGAGGCTAACCGCGCCATCACGAGAACGTCTTCAGGAAGCGATGCGCGGGCACGAACACTTGGAGCACATGAGTCGCGCGTCTGAGAACTGAACCATTGCCCGCACGACCTTCCTTTCACCTAGCTGCAGCCTGAGTTAGGCACGTCCAGATAATCGCATTAAGACAGATGCCAGGTCGTTACGTATGGCGAAGTAGGTCCGGCGG
# Right flank :  CGGTGTGCTCGGATCCCTTTGTAATCAAAGGCGATTCGGGTGCCCGAGCAAGCTCTGAAATCCCGATTTCGCTCAGAACAACGCGAGCTGATCCGGATTTTTCCTTTGGCGCCTGCGTCGTTGGCCGGAGAAGCGGACGATGTTTTCATACTGTCGGTCCGTAAAGGTCAGGACATGGACATCGCCGCGCGCCGGGAGATGCGCCTCGATACGGCGCATATAGGCCTCAAACTGCTCCTTGCCGTTGCAGAAGCGAGCATAGACCGAAAACTGGCTCTTCTCGAAGCCCTCATCGAGGAGATACTGGCGAAACTTCGTCGCAGCACGGTTCTCCGCTTTGCTGGACACCGGCAGGTCGAACATCACGAAGATCCACATGAGCCTGTAACCGCTGAGCTGGGTGATGGTCATGGCGCCGGCTCCGGCGCGGAGACAGGACGAGCATCCTCCGTCGGTCCGGGGACTAATCGGTCGAGCCCTGCAATCTCGATCGGCGTCGG

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCCGCTAGACCACGATCTCTAACTAGCTATTCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         R [matched GTTGCCGCTAGACCACGATCTCTAACTAGCTATTCT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.90,-4.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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