Array 1 54279-54461 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMJ02000012.1 Leptospira kirschneri serovar Grippotyphosa str. RM52 ctg7180000003034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 54279 38 97.4 34 ...........................C.......... TCGTCAAGGTCGAGTAATCTCTCAACCATAGGCA 54351 38 100.0 35 ...................................... GAATAGTTATCCACTATGAAATAATCCCATATTCG 54424 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 99.1 35 TGTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TTCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTTAGTTTAGACAAAATTCTATACACTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAATCGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCGGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTGGATTGAATGGGTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGC # Right flank : CTATGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGACCTTTCTTTCTCTATCGAAGAGAACGTAGGTTGAAATTACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGTCTGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 14979-15150 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMJ02000004.1 Leptospira kirschneri serovar Grippotyphosa str. RM52 ctg7180000003047, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================== ================== 14979 26 100.0 47 .......................... TAAGACAACAGGCAACAATGGCCCCGGAAAAACAATGTTTCAATCCA 15052 26 100.0 47 .......................... GGTTGGATGCTAGAAGAAGAGAAGGGAGAGGACCTTGTTTCAATCCA 15125 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =============================================== ================== 3 26 100.0 48 CTCTCCTTTTAAAGAAGAGAAAGAAC # Left flank : CGCCAAACCCATGTTAAATTATTATGAAAATGGCATCAAAAATGAGCAGTGTATTATTTGCGAAAGTGTAAAAGCTCTTATAATTTGTGTTGTTCCGTAATTTATGCTTGTTTTGTGTTAGTTCCCACATTTTAAGTTTTGAAAGAAATATTAGAATCGTATTATTTTCATGTGTGAGTAGTCACTTTTTTGTTCATGTTACAAAGTGGGGATCTACCTTAAAATTGATTTTATACTAACGTGAGTTTGAACATGATTCATTTTTCTGAAAAAAGTTGAAATCTGAACTTTACAGATCGATTCCTAAAATGTGGGAACTACCACGAATCGCGGTTTTACGAACAAATTCTGATATCATACTTTTAGAGAATTTTTTCTCGGCCGAACTCATTCTTTTCAAGTTCAGAAGGGGCGCTATTTTGTCATAGAGAATTCAAACTGAAATAAATTGGGTTCTGTCGGAATTGAATACAATCTGGATTGGCTTTGGCTTGTTCTTT # Right flank : CAGCGGCTTGATAGGTCGAAAAATTATATATTATAAAAGCTTTATTGGCTTTTATAGACATAATAATTGCGAACCTACTTTTGCCATGCTGAACAAATGCTAAGCGAAACCGTTCAATCGCCAAACAGAGAATCAATACAAGGGTGCGAAAGGTTCGTGATTGATCGGGAGAAACAGGTTCGCAAAAGCGTTTTCATTATAAATGATCGGCTTTTAAAAATCTATAATATAGTTAAAGAAAGAATAGAATTAGAAATTTATAACTATCTAAAGAGACGTAATTATAAAAACCACTGTGTTTCGTATTTTGAATTATGTTTGTTGCTAGAATATATGTTTTACTCATCCCATAAAATTGAACCTCGGTAAATGTTGTTATAAAGCGTCGGTTAGGAGAGTTCTGTATAATCCAATGTAGTATATGAGCCTGTCGAACAGTGAGACGTTTTAGTTTGAAAGAGTTTTTTGCTAAAGTTCCTATCGCATCGATCCTTTTCGTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCTTTTAAAGAAGAGAAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1284441-1284619 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMJ02000014.1 Leptospira kirschneri serovar Grippotyphosa str. RM52 ctg7180000003046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1284441 36 100.0 37 .................................... CCTCAGTTACAAACTCTAAATCTTTCCGAAAAATTTG 1284514 36 97.2 34 ...................T................ CAATCGGATCAACATATTTGTAAATTACGACAAC 1284584 36 80.6 0 ..........................AAAGGAC... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 92.6 36 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAA # Left flank : TGATTCCGAAGAAGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : ATTGAAGCCAATCTAGAATATAGTTGTTGAAAAATGAATTCTCCATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTCAACAACTATAATTTTGAAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATGGCAAAAAAGATAAAAAGAGACGTAATCTGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAAATCCACGATTTGTATGAGTTCCCACATTTTGAGACCAGAAATAGGAAAGGTTCGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGAGAATATAGTTGTTGAAAAATGAATTCTCCATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAAT # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 25925-26244 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMJ02000024.1 Leptospira kirschneri serovar Grippotyphosa str. RM52 ctg7180000003025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 25925 36 100.0 36 .................................... ATACGCCATCCCGAAGAGCTTTGAAAGTTCTCCGAA 25997 36 97.2 34 .....................C.............. GGGCAAGAGGTTCTATATTCCAAAAAACTCGCGT 26067 36 100.0 34 .................................... CGAATACCTGCGCACACTGATCAACCGTCAGCGG 26137 36 97.2 36 ......................T............. AGGCCGCCCTTGATAAACTCAGAATCGCACGGTTAG 26209 36 94.4 0 ............................C.A..... | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 97.8 35 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACACTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGCAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCTAATCGTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : CAAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCGAAGTGAAAATCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCGCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTTTCGACTTTGAATCAAATCGTACTTTTTAACGTTTCATGGTCGCAACCCAATGTGCAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGCCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAGCACGAGT # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 107502-108033 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMJ02000002.1 Leptospira kirschneri serovar Grippotyphosa str. RM52 ctg7180000003042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 107502 34 97.1 37 .T................................ AATGACTGGGCGGCGAAGTTATCAAACGTGTTTAATT 107573 34 100.0 37 .................................. AATGACTGGGCGGCGAAGTTATCAAACGTGTTTAATT 107644 34 100.0 37 .................................. CTCTGGATACATTGCAGATTCGTCCAACGCCATAATT 107715 34 100.0 37 .................................. AATGACTGGGCGGCGAAGTTATCAAACGTGTTTAATT 107786 34 97.1 37 .............G.................... TGTCACCCATGTCCATGCGGAAACCGCCGCCGTTATT 107857 34 100.0 38 .................................. AAGAAACGAAAATGGCATTGGTTGAAAACCACCCTATT 107929 34 97.1 37 .............G.................... TTCCGCGTAATCGCTTGATATATAACGTCGTAACATT 108000 33 85.3 0 ........................T.-.CA...A | G [108022] ========== ====== ====== ====== ================================== ====================================== ================== 8 34 97.1 37 TCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : AAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGTGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCTATT # Right flank : AAACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAAC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : TCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //