Array 1 343043-342656 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKK01000012.1 Pseudomonas sp. TTU2014-080ASC scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 343042 28 100.0 32 ............................ TTGGCGTTAATCGCTATCGAGAGTTGAATGCT 342982 28 100.0 32 ............................ AGCACCTCGATACCAGCGCCGGTAATCATGTA 342922 28 100.0 32 ............................ CGCCCGCTTTCCGCCCTGATCTTTTAGCGCCG 342862 28 100.0 32 ............................ ATGGAGCGCTGGAAGAAACGCGAACGAAAAGA 342802 28 100.0 32 ............................ ATTTGGGTGAGTAACGTAAAAGGCGGGCTGAC 342742 28 100.0 32 ............................ TTGAAAATGTCGGCGAGCTTTTCCTGCTCAAC 342682 27 85.7 0 .....................-.G..TC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 CTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : AAAACAGTGGAGTGCCTCCGCCTCCACAAAACCCGACCAGCACACCGGCCTTGGCCAGCTCGCGCATGGCTGCTTGGGTAATAGATGTGCCGGTGCCGAGCAAAATAGTGGTGGTATTGGCGATGGGGATATTCCAGTACAGCGACTGTTTACCCGCATCGGTGACGTATTCGACTCGTCCGCCATTCACTAACACACGGCAGTGCTGTAGGTAGTAAAGGTTGGCCCGTTTGGAGTGCAGTATCGACTTGAGGTCACTTGGGCTCAGATCATCCATGAGAAGAGGCTGCCATTTATTGTTTTGATGGCATTCTGGCATTGCCCATTGAAAATGGAAGTAGACGAAGATCCAAGATGTGAGTGAGTCGATAACCCTTTTTTCGAATGATTTTTTTAGCCTTTTTAAATCAACGGGTTACCCGGATCTCAGAAAAAATGGTTTTAGGGCAGTTATTGGCTGCAAGGCTTAACTTGCATGGGTTTCACGGGTAACGTCTCTA # Right flank : GTTTTCTGATTGCATAAAAAAGGCGAGCTAAGCTCGCCTCCATGTTCAGGGTCTGTCAGTCATTGCGCTGATAGATGATCTTCTTGGTGCCGCCGTCGCAGCTGCCGACCACCATGCTCGGGTCTTTGGAGTCTTCGTTGTTAACGATCTCCAGGGTGTAGCTGGCAACGCCGTTGGCCTGGATCTTGGCTTCGATCTCGGCGCGCAGCTCTTCGCAGGGCTTGGGGGCTGCCAGGGCGACGCTGCTGAACAGGGCGAGCAGGGCAATTGGGATCAGTTTGTTCATGTTGTAGCTCCTTGAATTTAATGACCTACAGATCGTTTGACTGATGGCTGTGGGCCAGAGTTCGGGACTGGGCTGCCAGCGCTTCCAGTTTCTGCTGGCGTTTGCTGGTTGTGAGTCGGCCTAAGTGCTTCACCTTTGTATAAAACTCAGGCCAGCTTTGCCCTGCCTCGTCATACAGCCTAGCAAAGGCTGACACCCATTGATCGTAAAGTCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 351785-353976 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKK01000012.1 Pseudomonas sp. TTU2014-080ASC scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 351785 28 100.0 32 ............................ AAGCTGATCGGCTTGGACCCTGTGCGGCTGCC 351845 28 100.0 32 ............................ ATAACATGGCATGGGTAAAAGAAACCGCCGTA 351905 28 100.0 32 ............................ ACAGCGCGCAGCGGGTCGCCAGCTACAGCATG 351965 28 100.0 33 ............................ AAAACAGCCCTGGGCGTGACGCCGCGTATTCTC 352026 28 100.0 32 ............................ CGGCAGTTCAGGCCGCGAAAGCGGGAGAAGAC 352086 28 100.0 32 ............................ CTGCTGCCCGGTGAAGACATCGGGATGATCGA 352146 28 100.0 32 ............................ GTGCTGATCAATCAAAGGCACTTCACGGGTAG 352206 28 100.0 32 ............................ GTTGCCGGGTATGACTTTGGCGTCCTAAAGGG 352266 28 100.0 32 ............................ ACCAGGCAGGCGGTGGAGAGTCTTAACGCGGA 352326 28 100.0 32 ............................ AATGCCATCACCGTCGCCATCGGGATTGCCGT 352386 28 100.0 32 ............................ GCCCAACACGCCGGTACCGGCATCCGAGATTG 352446 28 100.0 32 ............................ CATTCGATCTGATCACCGCCAAGGCTGTGATC 352506 28 100.0 33 ............................ ATGAAAGAGATCGAGCACTCAGGCTTCCGGGTA 352567 28 100.0 32 ............................ ACTGCTGGAAGGTTTCGGCGGCCTCGGTGAAG 352627 28 100.0 32 ............................ TTTGATGCTCGGCGGGATCGCTATTGCTCTGC 352687 28 100.0 32 ............................ AAAACCAGATAGGCAACGGTCAGCGCGCTTAT 352747 28 100.0 32 ............................ TACACCTGCGCCGACTACGACGAGATCGAAGC 352807 28 100.0 32 ............................ CGAAACGGTCAGGCTCAGGCTGCGGCGCACGC 352867 28 100.0 32 ............................ AATCCACATCACAGTTTTCGTCGAATGAGGGC 352927 28 100.0 32 ............................ TTCGCGTTATCAGTTCCGACCTCGGTCAGGTA 352987 28 100.0 32 ............................ TGGGAAGTCTTCAGGCCGGCGCGCCTGATGAT 353047 28 100.0 32 ............................ TCACCGTTGCCGGTTGTGTAGTTACCGGCAAA 353107 28 100.0 32 ............................ GGTGGCCACGGATATCAGCAGCCCGACCAGCC 353167 28 100.0 32 ............................ ATTGGTCTTGGTGATGGTCTTCAGTTGAGCCA 353227 28 100.0 33 ............................ CTGATCCGTGCGACCTCGGTGTCGTGTGGGTCA 353288 28 100.0 32 ............................ TACCCAGCTGAACTCCTCGTTACGCTGACGGA 353348 28 100.0 32 ............................ TATGCGCGCTGCCGCGCCAGATTGCTTGGTTC 353408 28 100.0 32 ............................ TTCATGACTAGGCCGTCTGCACGGGTGAACTG 353468 28 100.0 32 ............................ TTATCAAGCGCGCCGATATCACCGAGCGCTAC 353528 28 100.0 32 ............................ TCAAAGACCTGCGCCACACCTACAGCGACCGC 353588 28 100.0 32 ............................ TGCACTCTGTCCTTGATCCATACCCGAGCCTT 353648 28 100.0 32 ............................ ACAGCGCAGCAAAGCCAGAGCTTGAAATAACC 353708 28 100.0 32 ............................ AAATCACAATTGCGCGTCAATCATTTTTGGTA 353768 28 100.0 32 ............................ GTCGCTCGTCGCGCCGTGGAACATTGCACAGC 353828 28 100.0 32 ............................ CGCACAAGTCATTCAGGCCGCAGGTGGTTCGT 353888 28 100.0 32 ............................ TGCCCGCGCTGAACGGTGAGCGTGCCAGCCAT 353948 28 96.4 0 ...........................C | C [353972] ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.9 32 CTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GAGGCGTTGCAAAAACTGTTAGCCCTCAACTGGCTGACTGGCATGCGCGACCATGTGCAAGTCAGTGCAGTGACTGCTGTACCGGCAGACACCAAGCACCGTCTAGTCAGCCGTGTGCAAGTCGACAGCAATCCAGAGCGCGCCCGCCGCCGCCTGATCAAGCGTCACGGCATCAGCGAAGAAGAGGCCCGCAAACGCATCCCAGATAGCGCCGCCAAACGCTGCGACTTGCCCTTTGTGGTAACGCGCAGCAACAGCTCAGGGGAACGCTTCAACCTGTTTATCCGTCACGGACCGCTGCTCGACAGCCCCCAACCAGGAACCTTCAACCAATACGGCCTAAGCAGCACCGCCACCGTGCCCTGGTTCTGACCCTTTTTTTGCGCTGAATTTAAGCTCTTTAAAAATCAATGACTTAGGTTTTAGGCAAAAAATAGGGGGTTCCAACCAAAAACCGCCACAGCCCTTTTCCTATAAGGGCTGTGGCGGTTTAAACTCTA # Right flank : CATCGCATAGACCCAAACCGCTGTTGAAACAACCAGCGCCGCCCTGAGTGCAGGGTTAGTTGCTCTTAGGTCAGTTTCAGTAATGCGCCTTCAACAGAAAACTTACGGTGTTTTGGTCAGTTGACCCGACAAAGTTGTCGCTGACAAAGCCGCCATCTTTGATGCCGTATTTGTTCTTCCAGTAGTCGTACTCAAGGCCGACGTACAGTTGCTTCTCGCCCCAGCTCAAGGCTTTACCCAGGTCGTATTTGATCTGCGGGTTGAAGTGCAGGTTGGCCTGATATTCGCCGCGGCTGTTTTCGTCGTTGTCCACCACCCAGTCCATAAAGCCGTCGATCAGGATGTCGGAGTTGCCAAACGGAATGGTGTAGCTCCACACCGGGGTGATCTGCCAAGTGTTGGAACCGGCGCGGTCACCATCAGCAGTACGCAGGTAGGTGTTGAGCTGGAAGTAATCGAAACCGGGAAGCTCCAGATCGATAGCCGGGCCGATCAGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //