Array 1 4066394-4066727 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078571.1 Escherichia coli strain Colony175 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4066394 29 93.1 32 NN........................... CCANNNNNNNNNNNNNNNNNNNNNNNNNNNAT 4066455 29 100.0 32 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAT 4066516 29 93.1 32 ..........................A.T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 4066577 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 4066638 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 4066699 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGYGYTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTRTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAGWGTTCCCCGCGCCAGCGGGGATAAACCGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCAGCGGGGATAAACCGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAANNNNNNNNNNNNNNNNNNNNNNNNNGCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4092619-4092769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078571.1 Escherichia coli strain Colony175 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4092619 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 4092680 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 4092741 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCYGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCYGTTTCWCTGGGAGATGCMGGMCATCGGAGTAGCTGARATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAAWCGGGATTTGAGTTCCAGACATTTGGGKTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTRTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GTTTTTGTTCTCTTCAAAACGCCGAACAACCAAGAGTTCCCCGCRYCAGCGGGGATAAACCGGRCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCYCTGCGGTAGAACTCCCARCTCCCATTTTCAWACCCATCAAGACGCCTTCGCCARCTCCTTCACCAGMGGTAGCATTATCCGCATAACRTCACGGCAGCGACGTTCTATTCTTCCWGGAAGWGCCTTATCAATATGTTGKTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCMGGGAAKGCAGSTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCARTTWGTYGCTTCYACCGAAAGTACRGCAATRCCSGCTTTGTCGAAWAYTTCKGCGTCATTACAACASCCAGTRCCYTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCWATTCCRTGACTRCGCGCAATTGCCAGYGCCCTGTCGCGCGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //