Array 1 166965-164251 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXR01000003.1 Salmonella enterica isolate STY43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166964 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 166903 29 100.0 32 ............................. CACCTGGTCGAGGGCTCGAATCGGTGAATAAT 166842 29 100.0 32 ............................. AAATCCATTCTTGCGATACGATTAATTTACTT 166781 29 100.0 32 ............................. CAGCCAGTGCCGGTAGTGCAGACGCAGCAGCC 166720 29 100.0 32 ............................. GCGATTACTGATGGCGGCGTGTGGTTCGGTGA 166659 29 100.0 32 ............................. TATGCGTAACCAGTAAATAAAACTGTTACGTG 166598 29 100.0 32 ............................. ATTTCGTTATACCCCTTCACAACCTCGGCAGG 166537 29 100.0 32 ............................. TTATGCGGCTTTCTACTCCAGTGCGGCGCAAG 166476 29 100.0 32 ............................. TTGATGTCATGTCGTGTACAGACGCTGCGTCA 166415 29 100.0 32 ............................. GGTACGCGACATATAACGGCATGGGGCGTGAA 166354 29 100.0 32 ............................. CGCTGGTTTATGACATCGCCGACATGATCAAA 166293 29 100.0 32 ............................. ACTGCGTGACGCCGCCATCAGGAATGTTAATA 166232 29 100.0 32 ............................. GCCATTGAAATCATTAACAGCGATAAAATTTG 166171 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 166110 29 100.0 32 ............................. TAACCTCTGAATTAAGATGCGGTTTGTACGGC 166049 29 100.0 32 ............................. CCGGATTAACCGGCTTCATTGTTGGTGGGGGA 165988 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT 165927 29 100.0 32 ............................. GCGTACACGGTTAAACTTATATAGTGACACGT 165866 29 100.0 32 ............................. CCCCGGAAGTGGCCGGGGAAACAAGGCAAGTC 165805 29 100.0 32 ............................. TACCAGGATACCCTGAAACGCTACCGTGTCCC 165744 29 100.0 32 ............................. CGCAGCAGCGAAGACCTGAAAGACGCCGTGAG 165683 29 100.0 32 ............................. GACTGTTTTCATATATCACCCCTTGCTCCAAA 165622 29 100.0 32 ............................. CAGCGCCCGCCGGTGTTGCGCTACCGCGTGTT 165561 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 165500 29 100.0 32 ............................. CCATTGATGAGGCTATCGCAGCCGCACAACGG 165439 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 165378 29 100.0 32 ............................. TCTCGCCGCATAAAAAAAACACAGCTCTACTA 165317 29 100.0 32 ............................. TTATCGGACTGGTCAAAGAACTCCGCGAACTG 165256 29 100.0 32 ............................. AATGGTTCGATATGAGCAATAAAGAACCTGAC 165195 29 100.0 32 ............................. TTACGATCAAATGTTAGCGTCATTTTATGACC 165134 29 100.0 32 ............................. GCAGTCGCTGACCTGTACGCCCTGTGCTGGCA 165073 29 100.0 32 ............................. CGCTCGCATGATGGCGCGATTACTTAATGTCA 165012 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGACTGAACA 164951 29 100.0 32 ............................. TCTCGCCAGTGGCCTGAACCGAAAGACGGTGA 164890 29 100.0 32 ............................. CACATCACGGATGTGGTCTGCATTTTGAAATC 164829 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 164768 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 164707 29 100.0 32 ............................. TTGACGCGGAGATATATTCATTCAATAAATCC 164646 29 100.0 32 ............................. CGGAACTTGTAAAGGCGACGCAGGGTTTAACC 164585 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 164524 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 164463 29 100.0 32 ............................. CGAAGTTTCAGGCGTTACCGCCTGCGGAACGG 164402 29 96.6 32 ....A........................ AAGACAACTCCTGTCTTTCCATCACTCGAAGC 164341 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 164280 29 96.6 0 A............................ | A [164253] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGTCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCTCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184528-183646 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXR01000003.1 Salmonella enterica isolate STY43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184527 29 100.0 32 ............................. GGGCTAACGCCATTAAAAGAACTGGTTCCGTA 184466 29 100.0 32 ............................. CGGTGCTAAAGTTCGGAGAAGATCCCCACGCC 184405 29 100.0 32 ............................. TAGCCGGGTTCGAGTCGATGAAGCAATCCGTC 184344 29 96.6 32 ............................A CGCGTCCGACTGAAATCACGCCTCTGTATCCC 184283 29 100.0 32 ............................. ATAAAATTAAAAATGTGACCCATGTCAATAAA 184222 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 184161 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 184100 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 184039 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 183978 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 183917 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 183856 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 183795 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 183734 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 183673 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //