Array 1 8410-9934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUU01000084.1 Pseudomonas aeruginosa strain WH-SGI-V-07300 WH_SGI_V_07300_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8410 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 8470 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 8530 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 8590 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 8650 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 8710 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 8770 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 8830 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 8890 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 8950 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9010 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9070 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9131 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9191 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9251 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 9311 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 9371 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 9431 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 9487 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 9547 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 9607 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 9667 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 9727 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 9787 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9847 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9907 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20098-18809 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUU01000084.1 Pseudomonas aeruginosa strain WH-SGI-V-07300 WH_SGI_V_07300_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20097 28 100.0 32 ............................ GCCGGGCGGCCCCTGATCACCAGCCACAACGA 20037 28 100.0 32 ............................ GGACGAATGGCAGCATGCCGCAGCAAGTTATC 19977 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 19917 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 19857 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 19797 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 19737 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 19677 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 19617 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 19557 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 19497 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 19437 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 19377 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 19317 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 19257 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 19197 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 19137 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 19077 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 19017 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 18957 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 18897 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 18836 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //