Array 1 4955-4683 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMJW01000305.1 Actinomadura bangladeshensis strain DSM 45347 NODE_305_length_8579_cov_26.8159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4954 30 96.7 31 .............................G CCCACCGGTCCGGGGAGATGGTCCTCGGCCG 4893 30 100.0 31 .............................. GACCGTCCTCGTGAACCCGTCCGAGCCGGAG 4832 30 96.7 31 .....................T........ TCACGGCCTGGGCGACGGGTTCGGCTTGGGC 4771 30 96.7 31 .............................A GGCTGACGGTCCGCCAGTCGGTGCCGTCCAT 4710 28 90.0 0 ....................-....-..T. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 96.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : TCCGCACGTCACTCCACCAGAAAACCGAACATGCGTTCTAGTATGCCCATGTTGGCCAGCGGATCCGCAACCAGCCCGCCGACACGCTCACACCCCCGTCAGCGACCGCCTCCCACACGATTGACTATGGACGGCGCCCCGCAGCAGGCGCACACTGCAAGCCATGGCCAAGGCGCGGCACCTGCTAGGGCCAGACGGCATACGCGTCAACGTCATCACGCTCGACGACGGCGACCTGGCTCTCGTCCAAGCCCACCACCCCGACGCCCGCGCAGGCCGAGCCTGGTTCCTCGTAACTCGACGAGCACGGTTTCCTGAACGCGACGAGTCACCCCCGCGTGCGTGGGGAGGCCCCGGCCGCGCCGCCGCCCGCACTGGAGGGGGACCATCCCCGCGCGCGGGGAGCACCTGTTGATCAGCTCGTCGGTTTCGTTCTTGGTGGGACCATCCCCGCGCGGGGATGGTCCCTGGGCTTTGAACTCGGCGAACGTCATGCGGCC # Right flank : TTACTGACCATGCGTGCCGGTGGACAAGGGATTTACACGTGGCGGGTGCCGAAGGTAATCGGTTCTTGGTTCATGTAGCGGCCGTATTGCCTGGCCAGGGTGTCCAGTCGGAGCAGGGGCCAGCGGGTGACGGTGCCGGTGGTCTTGTCGATGACGAGGGTGGTCGCGGTTTCACTGGTGGGAACCAGCGGCGGCTCTGGGATGGGCACCAGGATCGGGATGGCCTGGTAGCCCTCCTCGAACTCTTGGATGTGGATGAGGATCAGGGCGTCGTCGGGGTGCGGCAGGTGGAGGTGTGCGCGGCGCCAGGCCTCGGCGGCGTCGAGGTGTGCGGGGTGGCTGCTGGACGAGCCGTCGCTTGCGAGCACTGTCGTCAGGGTTTGTGTGGTGATGAAGATCAGGTCTTGGGCGCGGCGGAGGAAGTCGAGGGTGTGGTCGTCGAGGTGACGGGTGGCGGACGGTTGGGTGAGGAGGCGGTCGATGGCGATGCGGTCGGCTCG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3266-3538 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMJW01000309.1 Actinomadura bangladeshensis strain DSM 45347 NODE_309_length_8292_cov_33.4305, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3266 29 100.0 32 ............................. GCCCGGCTACAGAAGGACGCCACCGACGATGC 3327 29 96.6 32 ................C............ GCATGGCTTGACTCATCAGTGCACGGGTAGCC 3388 29 100.0 32 ............................. GACAGGACTTGGGTTTCATGCGCCGTGTCGTT 3449 29 100.0 32 ............................. TCATGCTCGCGTACCGCCTCGTGGTGGCCGTA 3510 29 86.2 0 ........T.T.........A...A.... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Left flank : CCACCCCGGCCCAGCAACCACCACCGCACGATCGAGTTTGTGGGTGAGGTGGTGATCGCCTGTCATTCCAGGGTGATGCGGTCCTTCAGCAGGCTTCGGATGACCAGGTGGAGCACCTTGAGAGCAGCCTCTAGGTGGGAAAGCGGTGTTGGTACCGAAATGGACCGTCCGGCAAGCGGCAGCAGGGGCAACACTGACGATCGCCGGGTCTCGGACCGATGCCACGAGGTCATGGCGGTGCTCGACACAGGTCCACGCACCCACATCGCCAAGCAGAGAGCGGACATCGGCATCGACAGCAGGCGGCTGACGGCTGGCGGCGCCATCGCACCCACTGCCTCGGGCGCTGCCGCGCCAAGGCAGGCGCAGACGCAGACTCCCCGGCAGTTAGTGAAGACTGCGACACCCCATGCCCAATAGTCTCGTAACCGTGACACCACCATCGACAGCCGGAATGTCTCAAAACGGCAACGGGACTCCATAGGCCCAGGTCAGAAAGG # Right flank : GATCTCGCCCTACAGAGCGGTGTCGAACCGGGCACCGCTTCGTAGTATCGGTACATGAGCACCGACGCTGACGGCATCGAGCAGCTGACGGCGGCGTGGGGGCGGATCGAAGCCTGGCTTGGGGCGCACGCCCCGGCCTCCGCCGCGCTGCTGCGCGCGCCGGCCAGTGAAGCCGGAATCGCCGCGGCGGAGTCGGCCCTGGAGGTTCAACTTCCGGCGACGCTGGCCGCCTGGTACCGGATACATGACGGGATGGCCGAAGACCAGAGCTCCGAGGCGCCGCACGTCGCCGGGATCCTCCCGTCGCGCAAGACGATGTTGCCGCTCGACCGGGTGGTCAGCGAGTACCGGACGCGTACCGGGGACTGGGCGCGGGAGGCGGGCATCGTGCCGTTCGCGCGGACGCCTGGGGATGGGTGGTCGGGCTGGTACATCGATGCGCGCAGAGATGCACCTTCTTTCGGCAACCTCGGTTCCTGGGCGGTCGATCAAGCGGACGA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //