Array 1 102919-103909 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKT01000012.1 Yersinia pseudotuberculosis strain LFB2015M0M102/I1 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 102919 28 100.0 32 ............................ AATTATTCCGTTCTCAGCCAGGCTTTTGCCGA 102979 28 100.0 32 ............................ CAAGAAAAGACACGCCAAATATCTGAGCAGTA 103039 28 100.0 32 ............................ ACAGCCAATCTACTTCCGTTCTCTGAGATTGA 103099 28 100.0 32 ............................ AGACGAAGAGCCACGCCAACGTAAACGTAAGA 103159 28 100.0 32 ............................ TACAGCGGGCCAACTATTAGTAGATAGAGTTA 103219 28 100.0 32 ............................ CCAGATAAAAACCTGATCACCCTCATCATCAT 103279 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCCGCTCCT 103339 28 100.0 32 ............................ CATTGAAATAATGGTTACTGGTAACGGACAAG 103399 28 100.0 32 ............................ CCCGTATTTTTGAGTGCCAGCTGCTTCCTGCA 103459 28 100.0 32 ............................ ATTTATCGCCTGACTTGACAATCATGACTTAA 103519 28 100.0 34 ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 103581 28 100.0 32 ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 103641 28 100.0 32 ............................ CAAATGAGATTAAAGCATCAGTGCAGTACATG 103701 28 100.0 33 ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 103762 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 103822 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 103882 27 89.3 0 .....................CC.-... | T [103908] ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 72373-74868 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKT01000002.1 Yersinia pseudotuberculosis strain LFB2015M0M102/I1 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72373 28 100.0 32 ............................ AACGAACCACGTGTACGCGTGGCTAGCTATGG 72433 28 100.0 33 ............................ GCACCCATAACTCTCGTTCCGTCAGGGATTGGT 72494 28 100.0 32 ............................ ATCAATGAAATCAAGCATTTCTCTGATTTCTT 72554 28 100.0 32 ............................ GCATTCGATTTACCGTGGGCGTCAGCCAGCTT 72614 28 100.0 32 ............................ ATCGAAACGGAACGCAGAAAGGAACACAAAAT 72674 28 100.0 32 ............................ GCCAATAAGTGATAGCGCTCCCCTTGCCAATC 72734 28 100.0 32 ............................ TTACCGGCATCATACCGGGCATGTATTTCATG 72794 28 100.0 32 ............................ AAGCGTTAGCTTCCGGGGTTCTTCGCGGGGAA 72854 28 100.0 32 ............................ GTTAGAGCAATTACAAAGGCATTAATTATTGG 72914 28 100.0 32 ............................ TGTTCACCGTGACGCTTGGTAAGCCAGTCGAT 72974 28 100.0 32 ............................ AGTTCCATATCAACGGATTCACATAACGCTTC 73034 28 96.4 32 A........................... AGAATATCCTTACGGTTGGTGTTGATGTGCCA 73094 28 100.0 32 ............................ ATGAAGTCAACTGACCGACAAAGCCGGGCGGG 73154 28 100.0 33 ............................ ACTTGCAGCGCATGAAGTATGCAAGAGAATTAA 73215 28 100.0 32 ............................ GCATCTTGCAGCGGGAGGAGGGGAAGAAGAGT 73275 28 100.0 32 ............................ ATAGCCACCACTTAATTATCATCATCAATCAA 73335 28 100.0 32 ............................ TATCGTTGATGATATTGTGATGAACGGTGGTT 73395 28 100.0 33 ............................ GCGATAATATTTTCATTAAGTTTCGCTATCCGG 73456 28 100.0 32 ............................ ATCAACCACACCATCGGCTGTGTGATGCTTAA 73516 28 100.0 33 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATACA 73577 28 100.0 32 ............................ ATATGAGAAACGTTTCACAAGTGAAATAGCTA 73637 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 73697 28 100.0 32 ............................ TATGGTAAAGCCAACTTATCCAGACATACCAC 73757 28 100.0 32 ............................ TATTTCGGAGGTGCTAAATAATGGCTCGTTAT 73817 28 100.0 32 ............................ ATATTCATCCAGCGGGACCGCTGATGTTTATT 73877 28 100.0 32 ............................ GGATTGATCGGGTGATTCTTCATGCGGCATCT 73937 28 100.0 32 ............................ TACACCACCCCACAGTTGAACTCTCCGGAGAT 73997 28 100.0 32 ............................ AAGAACCCGTCAGGGATTGACAAGAAAGCAGC 74057 28 100.0 32 ............................ GAGATTAATTGTATCGTAATAACTAGCCACGT 74117 28 100.0 33 ............................ CGCGCCCATTGCAGCCCCCTCATAGCCCTGACT 74178 28 100.0 32 ............................ CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA 74238 28 100.0 33 ............................ TTTTAATTGCTAATCTTGAAGCAGAACAATTAT 74299 28 100.0 33 ............................ ATATCAGATGGCGCTAAAACCTGTGTTTTAAAG 74360 28 100.0 33 ............................ CTATATTCGGCTGGCATAGGATAATCAAAATCA 74421 28 100.0 32 ............................ TGATGAATTGCGTCATCCAGAGCATTGTGATG 74481 28 100.0 32 ............................ ACTGTGGGATCAGATGTATCAGGAGGCTCTGG 74541 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 74601 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 74661 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 74721 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 74781 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 74841 27 85.7 0 ...................-A.A.C... | T [74865] ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //