Array 1 453526-455323 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXK01000001.1 Salmonella enterica subsp. enterica serovar Vinobrady strain BCW_2851 NODE_1_length_593073_cov_3.39227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 453526 29 100.0 32 ............................. CTGCCGTTGCGGGGGCAGACGCGCAGCGGCTG 453587 29 100.0 32 ............................. CGGCTTAGTGACGACGTGCCGGTTATATGGGA 453648 29 100.0 32 ............................. TTCATTACGAGATTCAACAAATCGCTCCGGGT 453709 29 100.0 32 ............................. CCCCCGGATACACCATTGTTGCGCCTCAACGT 453770 29 100.0 32 ............................. CCGGCTACGCGTCAGCAGACGTAGCGAAAGTC 453831 29 100.0 32 ............................. CCGCCAATAAACGAGATCAGCGCAAAGATAAT 453892 29 100.0 32 ............................. TGAACCTCTCGAACAGGTTTGTATGATAGGGG 453953 29 100.0 32 ............................. CAGGTTGTTTGATAACAAGAAAGACGCCAGTA 454014 29 100.0 32 ............................. CCGTCTCCGGCTTTGCATCAGGCAACATTTCG 454075 29 100.0 33 ............................. GCAACTGGATACCATCCAGCTCCACACGTTCGC 454137 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 454198 29 100.0 32 ............................. CTAATCACGAATCGGATACCGCTTGCGGATAC 454259 29 100.0 32 ............................. GCGCTGGCACGTGGGATGACGCCAGGACCATC 454320 29 100.0 32 ............................. AAAATAACGGCCCCATGCTAATGGCTGGCGAC 454381 29 100.0 32 ............................. GAGGGTTTATGAATTGGCCCAACTTTACTCAT 454442 29 100.0 32 ............................. TCCAGGGTGTAATTATCGTTCCTGCGTGTACC 454503 29 100.0 32 ............................. CCGTCAGCCGCCATCAACATGGCCTATAACGG 454564 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGCTGGT 454625 29 100.0 32 ............................. GGTGGCACACACGGGCTAACTATGCCTCAGGA 454686 29 100.0 32 ............................. TATTCAGGGTTACCACATCGCGGCAGAACCTG 454747 29 100.0 32 ............................. AAAATCGTTTTGTAATTCATCGCTTGCCTTAT 454808 29 100.0 32 ............................. CCTCGCCAATAAATATTTAGTGGTCCGTCACT 454869 29 100.0 32 ............................. ATGAATCCCTCGGTTATATCTACGTTGAGAAT 454930 29 100.0 32 ............................. GACGCTGGATTTACTGATGAGGCAGCCATGAA 454991 29 100.0 32 ............................. TACCACTGGCGCGGGCTGTCATTCCAGTACAT 455052 29 100.0 32 ............................. GGAATATGAAAATTATTATTTTTGCAACTGCA 455113 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 455174 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 455235 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 455296 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472050-474560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXK01000001.1 Salmonella enterica subsp. enterica serovar Vinobrady strain BCW_2851 NODE_1_length_593073_cov_3.39227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 472050 29 100.0 32 ............................. ATCCGCCGCAGAGTCAGCGCCGAAATACCACG 472111 29 100.0 32 ............................. GTGTGATCTCATTTGGCGAGGGGTGCGTAAAA 472172 29 100.0 33 ............................. CGCCTGCCCGCGAGGAAAATAGACCTGCATCCC 472234 29 100.0 32 ............................. GCCGCTTTACCCTGAAATCAGGCGGGCAGATC 472295 29 100.0 32 ............................. CCGCTGGGGCTCTCTCTTAAGGTTCGTCTTTG 472356 29 100.0 32 ............................. ATCGTTGTCGTTCGCGTTGCTGAGGGGAGTAA 472417 29 100.0 32 ............................. TGAGTTGTGCTTCATACGCTCTTTTTGCTCTG 472478 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 472539 29 100.0 32 ............................. CCACTGGCAGCAATCCTTAACGCTGCTAAACG 472600 29 100.0 32 ............................. GTACACTATATGATACTTAAATCAAGGGTGAT 472661 29 100.0 32 ............................. GACGCCCACAGCCAGGAATAGACCTCTTTCGC 472722 29 100.0 32 ............................. AACGTACAAGAAGCTCTCAACGTGTTCGGCCT 472783 29 100.0 32 ............................. GCGGCAACTCAACAGGTCTTCAAATTTGACCC 472844 29 100.0 32 ............................. TTCCTGTCCGATCTGAGCGTGACCGGCGAGGA 472905 29 100.0 33 ............................. GCGCAGGAAGCCGCGGCGTTTGAATATGAATGC 472967 29 100.0 32 ............................. GGGCGTTTAATCTTATCTCGCCTATTGGTTTA 473028 29 100.0 32 ............................. CTTGATAACGATCGCTGGGATGATATTGCAAC 473089 29 100.0 32 ............................. CGTAATAACTCCCCCGCCCTGGTAAATCCGGG 473150 29 100.0 32 ............................. GCGGGTTAAACCCCGCCTGATTATCGAGATTA 473211 29 100.0 32 ............................. GCAGGCCGGGAACACGAAGACGACACCACATC 473272 29 100.0 32 ............................. GGTGGCAGCCCTTAATTACCGCGTTATCTCAA 473333 29 100.0 32 ............................. CAGCCGTCACAGGACGACTTGCGCACCTGGCT 473394 29 100.0 32 ............................. TATCTACACTGTTTGCGATTGTGAACGATGGG 473455 29 100.0 32 ............................. ATCGTTGTCGTTCGCGTTGCTGAGGGCGAGGA 473516 29 100.0 32 ............................. ATCCGCGCCCGGCTTAAGGCGGCGGGCGTGAT 473577 29 100.0 32 ............................. GATAGCTAAAAAATACGATGGTGTGTGAGGGA 473638 29 100.0 32 ............................. GGCATTGACCCATTCGACCCTCCGGAAAACGC 473699 29 100.0 32 ............................. TTGAGTTCCGGGATTTCAATATCAGCATCTTT 473760 29 100.0 32 ............................. GTGATCGGGTTGCCGCTGGCATCCACTATTTT 473821 29 100.0 32 ............................. TCGCAGATCCCAAAAAAGAGACCGCGAGCAGA 473882 29 100.0 32 ............................. TTAGCGGGCGCACCATGAGGGCGCGGGGTTGG 473943 29 100.0 32 ............................. GCGGCTCTGTATTGGGCGATGGCTCCGGTGGT 474004 29 100.0 32 ............................. AAACAACCACAGTGCAGGAGAGCATTAATAGC 474065 29 100.0 32 ............................. AGAAAATGGAGCGCCTGCAATCAACGTTTACC 474126 29 79.3 8 ..............T.GCA.A.......C GTGGAGTA A,C [474153,474138] Deletion [474163] 474165 29 100.0 32 ............................. CAGCAACTCCTGCGCTGTGCGGTCATCGTTAT 474226 29 100.0 32 ............................. CACTGGCCGACCTGCACCCCAATGCCGATTTC 474287 29 100.0 32 ............................. ACCATAAAAAATGGGATATCTATCAGGACTTC 474348 29 100.0 32 ............................. CGATCTTCCGCCAGAACATCAGCAAGGCAAAA 474409 29 100.0 32 ............................. GAAAATCACCTTGATAGTTTTGGCCGCGAGAG 474470 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 474531 29 100.0 0 ............................. | A [474558] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //