Array 1 103162-102997 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE557274.1 Salipiger mucosus DSM 16094 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 103161 33 90.9 33 ........T....T..................G GCTGATGTGGAAAAGACCAGGCCGAGAAAGGAC 103095 33 100.0 33 ................................. AGATGCCCGGGTGGCTCGGCGGGAGCACGCTCT 103029 33 81.8 0 ...........C..............C.C.GAA | ========== ====== ====== ====== ================================= ================================= ================== 3 33 90.9 34 GTCGCACCCCTTGCGGGTGCGTGGATTGAAACC # Left flank : GTCCATCGTCCATCGGCCCTGCTCGATGGCATCGAGGGCCATGTAGACCGTCATCATCTTTGTCAGGGATGCCGGGTGACGCAGATCGTAGGCATCGTGCTCCGCCAGGACTTCGCCGGTCTTGGCGTCCACCGAGATCCAGGCAAGGCTCTTGGGTGCAGCAGTGGCCGAGGATCCGGAAAATGCGACAGCCGCGGCCGTCGTTCCCAAAATCAGCATTCTGCGCACCCTGCGTCCCAGCATTCTTGCTCTCCCGTTCGTGAGCGCAACATATCCGGTGCAGGCTTCTGCCGGGTAAATGATGGTGGTGGGATCAGTCTGAGTTGCGAACCCCAAGTGACCGCATGTACCCGGGGACGTTCCCAGATCGCGTTTGTCCTGCGTCCGTAGGGCTCTATCCATTGTGTTCTCTGCAGGGGAATCCGCGATTTCTTAAAAAATGAAGGGTTCGCAGAGCCGAAAGGATTGACGAGCCTATCTCAATAGCTTACAGACTGTAA # Right flank : CTGGCAGTGCCGGGTTCCCTTTCGTGGGGGATCCGGCACTCGTCTTTCAGGTGTCCGGTTCGGTCACGATCTCCAGCAGCTCTGCCTCCGGGACTGCGGTCATCAGGGCCTCCAGCACCACATGCACGGCTGCCCTCTCGGTCTCCGCATGGCAATCGACATCGAGGGTAATGTGGCCGCCCGCCGACAGACCAACCAGGAGGCCGTCATCGATGGGGCCGCCGACGACGTTGGAATAGATCCGGTCGCAAAGATCGATCTCGAGCTCTTCGGCCTGGGCATGCGCGCCCGTCACCCTCGCTTGGGCGAGTTTGGGAGCGCGCAGTCGCATAGTCAGATTGTAGGTGCTCTGGGACATCAATAGACGATCCTCACGTTGGTGTTGCTATGCGAGCAAACAGCTTCCGGATCCGATCCGGTGACCCAGAGATCCCTGTCGACGGTGATTTCGGTGGCGTCGAACGAAGCGGCGTCCGACAGGAGCGCCAGGCAGACCCCAC # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTTGCGGGTGCGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 409823-409508 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE557274.1 Salipiger mucosus DSM 16094 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 409822 28 100.0 32 ............................ AGGGTCGAAGCCATGACTGATATCATCCGCAC 409762 28 100.0 32 ............................ TTCAACCATTTCCTCGATGAAGCTTGGCTCAT 409702 28 100.0 31 ............................ CGCAAGCGGGTGCGGGCCGCACCACTCCTCT 409643 28 100.0 32 ............................ TACAACATCGGCGACGGCAACGAGCGCAGATC 409583 28 100.0 19 ............................ AGTAAGGTCAGTTGACCTA Deletion [409537] 409536 28 85.7 0 ...........GA........C.....A | A [409533] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 29 CCTTTCCGCCGAGTAGGCGGCTTAGAAG # Left flank : AGCCCGGAAAGATCGAGATTTCGCCAATCACGGAGCTCGATATTGTCCCGCGCGTTATCGACGATCTCACGCAAGAGCTCCGTTCGTGTCTTCCCGCGGCCGCTCTTCCGAAATCGCACGTTGCCGTTCAAGTCATGTATCTCGAGCTCGACAAGTGGCTCGTGCACCGCTTCACCGGACGACCGGAACCCTTTCTTCATTGCGTGGTGAACACTGCGCGGCGTTCGCGCAGCGCGCATTTGTCGGCTTTCCATGATGTCCTCGACGTTGAGAAATGTTTCGAACTCGCCTCGAGAAGTAGTCATGAGAACGAAAACGAGAGCGCTGCGCCGAAGCCGAAATCGTGCAAAATTTCCCCTTGCATCGAAAGACAATAATTTGTTAACTTCCCTTAAACCCCTTGTTTGTATGATCATTTTCGGCAGCTGGAAAAAGATCCTCCGAGGGTGCAGGCTGTCAAACGCTCTTTGAAAACATGGATTTGCAAGGCAAACGGAAGA # Right flank : AAGCAGCTCAGGCTGCTTGCTCGCTTTCGACGACATCGTTCAGAAGACTGACAACGAGACTCCGGACTTTCGTGTCCGTGTTGTCGTCTTCGAACATCGTCTCGATCTGCTCTCGAATGACTGTGCCGTCATCTGTTTTCGAGAAGTCTTCGCTGTCTTCGACTTGAATGAGCTGCACGAAGACGCTTTCGAGCGACTGTTCTTCGTCTTCACTGTCTTCAGTGATGCTCGAAATCAGTCGACCAGTCAGATCGAAGACGTCTTTGCGATGCGTGAGTTCGAACGGCTCGATCCGGCCATTCTGATCGAAGCCCCAGACACGCGGCGTATGTTCGATTGCGTCAACGGCTTGACGCGTGATGTTTCCGGGATTGAACCATGTCGTCTCGCCTTCCTTCCGGATTTTCTTCATCAAATGCATGTGCCCGTTGACCGCGAGCTTGCAGCCTTTGATTTCGTGCAGCGGCCGCGATCCGGGATACGCACCTTCGAAAGCAAGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTCCGCCGAGTAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTATCCGCCGTGTAGGCGGCTTAGAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //