Array 1 31375-31609 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVHI01000012.1 Streptococcus dysgalactiae strain INFECT5029_SDSE NODE_12_length_67753_cov_40.4653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31375 36 86.1 30 T...A.TT....C....................... ACAACCGAGTAGTTGAAAATGCTCGTCTGA C [31381] 31442 36 100.0 30 .................................... TGAAGAAGTGAAGGCAACTAAAGCTAAGAA 31508 36 100.0 30 .................................... TCAGGCCATGGGAGATTGTGATCGAGGAGA 31574 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : CTCAAGTTGTTTTTCTTGGCCTCCTTTACCCAACGGTTAAGGATTTTAAGCAAAGATTCAAAACTAAAAGTTTCTGGTCCATTCAAAGGCCTTTAATGATAGCAGCTTTGTTTCCTCTTATGATTGGGTTGATGGCTAGTGTTATTGGATTTGAAAACTTTTTTACTCTTTTTCATAAGGTGCTTTTTGTAGGAGATAGTAATTGGCTCTTTGACCCCTTGAAAGATCCTGTGATCTGGATCCTTCCAGAAGTCTTTTTCTTGCACTGTTTCCTTTTCTTTATGACCGTTTACGAAATCATCTTGTGGAGCTTAGTAGGTTTAGCAAGATGGCAGCGACCAAAGATATAGTAACAACTAAAAGTTAAGAATTCATTTTTCAAAAAATAAAAAACAAGCGCTTTGAAAACGCTTGTTTTTAGTTTATCGACAAGGTAAAATAAAGATACAAAAAGCACCGACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTA # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 97074-97702 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVHI01000002.1 Streptococcus dysgalactiae strain INFECT5029_SDSE NODE_2_length_114635_cov_42.1716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 97074 32 93.8 35 ............AT.................. ATTGACAAACACCACCGTTCCTTGCACCTCTGCCT 97141 32 93.8 35 ............AT.................. ATTAATACTCTTGGCTATCCAACAACTCCCGAGCG 97208 32 93.8 35 ............AT.................. TGTGTTATTGAGAGCATAAATCTGCATCTTAGTAT 97275 32 93.8 34 ............AT.................. CAACAAAGATACTAATAGAATAAATAAAACAAAA 97341 32 100.0 33 ................................ GCAGTTTGCTTTGAACTATCTAAGGGATTTATA 97406 32 100.0 34 ................................ TGAAGGTGTACCCGTATTGCGACCAAACGAACCA 97472 32 100.0 35 ................................ ATTTCCTCCTTTGTCCCGCCAAAACCTAATTTAAG 97539 32 96.9 34 .....C.......................... TGGGGAGAGGAGGTGAAGTAGATGAAGAAGTTGA 97605 32 100.0 34 ................................ GATGACGATAATTACGAAGTTATTGAGGTGACGG 97671 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.3 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATTCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGGA # Right flank : CCTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCTATTTATGTAGCAAGTATCAATCAGGACCACTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //