Array 1 44965-43742 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGF01000002.1 Streptococcus agalactiae strain UMB0776 ERR1203649.17957_1_61.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44964 36 100.0 30 .................................... GCAGCAGGAATGACTCATCTTGAAAATGAT 44898 36 100.0 30 .................................... CTTTAAGTATCGGCAATATTTGACGGATAT 44832 36 100.0 30 .................................... AACCGTCGGAAACCAGTCATCAAATTTTTC 44766 36 100.0 30 .................................... TTTTTTTAGTTCTCTCAAACATTCACTATA 44700 36 100.0 29 .................................... TGCGAGTTAGCAATTAATTCTAAGAAGCT 44635 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 44569 36 100.0 30 .................................... TAAAGCTAACGTTAGTCGTTCGCTCGTGGT 44503 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44437 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44371 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44305 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44239 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44173 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 44107 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 44041 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 43975 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43909 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 43843 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43777 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //