Array 1 956330-957455 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043214.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SL-312 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 956330 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 956391 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 956452 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 956513 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 956574 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 956635 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 956696 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 956757 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 956818 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 956879 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 956940 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 957001 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 957062 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 957123 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 957184 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 957245 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 957306 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 957367 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 957428 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 973714-975322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043214.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SL-312 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 973714 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 973775 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 973836 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 973897 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 973970 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 974031 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 974092 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 974153 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 974214 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 974275 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 974336 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 974397 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 974458 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 974519 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 974580 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 974641 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 974702 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 974763 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 974866 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 974927 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 974988 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 975049 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 975110 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 975171 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 975232 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 975293 29 96.6 0 A............................ | A [975319] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //