Array 1 699320-700342 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP065921.1 Staphylococcus pseudintermedius strain SP_11304-3A chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    699320	    36	 100.0	    30	....................................	GATAGCACTTTAAAAAATGGCTACAAGCCT	
    699386	    36	 100.0	    30	....................................	AACGAGTGACGCAAGGTTAAGCGCCGTTAA	
    699452	    36	 100.0	    30	....................................	TACTACCTTTAAGAGTACCTCTTACATGTT	
    699518	    36	 100.0	    29	....................................	CAAACTTTAAAAGACTTTAGTGCTATGAT 	
    699583	    36	 100.0	    29	....................................	ATTAATGCTTCTCGTCCATTAATCTCATT 	
    699648	    36	 100.0	    30	....................................	CATATTTAAGTAAAGGTGAGCTCGTTAATG	
    699714	    36	 100.0	    29	....................................	ATAAGGAATTAGAGTTTACTTTCGATAAT 	
    699779	    36	 100.0	    30	....................................	ATCTTCACTTGTCATAACGTAAAGGTTTAC	
    699845	    36	 100.0	    30	....................................	AAAAATGCTTGGTCTTTACTGATTGAAGTT	
    699911	    36	 100.0	    29	....................................	AGACATACTAACTAAAGTGAAAGAGGTGT 	
    699976	    36	 100.0	    30	....................................	AATTATCGATGTCATTCAAAATGGTGGACA	
    700042	    36	 100.0	    30	....................................	ACCGTTCCATAGCTACATGTCCGCTAATTG	
    700108	    36	 100.0	    30	....................................	CGTTAAGATTTGTTCAAAATCTTTTATTGC	
    700174	    36	 100.0	    30	....................................	GTAAACACTGTTTATCATGTTGAAGTGGCC	
    700240	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    700306	    35	  86.1	     0	.........T................-.CA.C....	|                             	TC [700339]
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.0	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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