Array 1 107961-108782 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHX01000004.1 Escherichia coli strain EC_63 NODE_4_length_230403_cov_10.182550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107961 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 108022 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 108083 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 108144 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 108205 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 108266 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 108327 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 108388 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 108449 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 108510 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 108571 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 108632 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 108693 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 108754 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134500-135809 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHX01000004.1 Escherichia coli strain EC_63 NODE_4_length_230403_cov_10.182550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134500 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 134561 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 134622 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 134683 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 134744 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 134805 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 134866 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 134927 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 134988 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 135049 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 135110 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 135171 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 135232 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 135293 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 135354 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 135415 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 135476 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 135537 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 135598 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 135659 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 135720 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 135781 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //