Array 1 93743-94625 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNLM01000008.1 Escherichia coli strain KE1567 contig_KE1567_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93743 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 93804 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 93865 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 93926 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 93987 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 94048 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 94109 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 94170 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 94231 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 94292 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 94353 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 94414 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 94475 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 94536 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 94597 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120328-121515 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNLM01000008.1 Escherichia coli strain KE1567 contig_KE1567_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120328 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 120389 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 120450 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 120511 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 120572 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 120633 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 120694 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 120755 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 120816 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 120877 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 120938 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 120999 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 121060 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 121121 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 121182 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 121243 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 121304 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 121365 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 121426 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 121487 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //