Array 1 1636746-1631746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGF010000001.1 Clostridium perfringens strain WLP-3 NODE_1_length_2072903_cov_325.645168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1636745 29 100.0 39 ............................. CAATAATCATGATGCCATTTGCTTACTCAATATCAGATG 1636677 29 100.0 36 ............................. TGAAGGAGTAAAAGCATTTATAGATGAAGCTGTTAT 1636612 29 100.0 36 ............................. TTACATTTTAAATCAAGCCCGCTGTATAGGAATTTT 1636547 29 100.0 37 ............................. TCTAAAATAAGAGGTAAGTGGACAGAAAAAGAAGAAA 1636481 29 100.0 37 ............................. TTAATATAATTCTTTGTTGCACCTCTACCTTTGAAAG 1636415 29 100.0 36 ............................. TAAACTTAAATCTTTTATTATATATTGTACTTCTAC 1636350 29 100.0 37 ............................. TAGAGTGTATTTGAGTCATGAATATTTTATTTATTAA 1636284 29 100.0 37 ............................. TTTTGTTAAATCTATAACTTGATTTTGTGAGTCAATC 1636218 29 100.0 37 ............................. TCAGACAACTTTTTTATAGATGAATTTAAGTCTTTAG 1636152 29 100.0 36 ............................. CCTTCTACAGGACTAATACCTCTTATAAGTAAAAGC 1636087 29 100.0 25 ............................. GTAGATAAGCCAGTAGATAAGCCTG Deletion [1636034] 1636033 29 100.0 38 ............................. ACTTGATTATGGCGACACAACTGACACAAAAAATGAAA 1635966 29 100.0 35 ............................. TTGTATCAATTCACTTAAAGCGTATAAATCTTGAT 1635902 29 100.0 37 ............................. TTCGCCAGTTTTGTTACGGCATATGCTAGAGTATATC 1635836 29 100.0 37 ............................. TTGATTAAGTTGTTTGGCTACTTCTTCTTTTAATCCT 1635770 29 100.0 36 ............................. ACTGTTGAATATGAGTTAAAGGGTGATATGGGATTT 1635705 29 100.0 36 ............................. TAATAATGTTCTCCTTCTTCACAATTATCTGGATCT 1635640 29 100.0 37 ............................. GTACAACATAAAAACTTTGAATTAAACAATGGTGTGG 1635574 29 100.0 36 ............................. TAATTAGTAAATATATAAATCTTATCTCCATACTTC 1635509 29 100.0 36 ............................. TATGCACGTTAAGGCTAATACAAAGCCTACAGTAGC 1635444 29 100.0 37 ............................. CATATTTCACACTTATTCTTTATTAATTTATTCCTTA 1635378 29 100.0 36 ............................. ATACTTGTTCCGTCTGATGTTAAAAACGTTGTACCA 1635313 29 100.0 36 ............................. ATCTTGTAAAAAATCTTTGTAAATCATTAAAAGCTA 1635248 29 100.0 37 ............................. TATTGAGATAATAAAATATCTTTTTTATTTTCTTTAT 1635182 29 100.0 37 ............................. CTTAAATTACCGTTATAATCAAAGCTACTTGCAATAG 1635116 29 100.0 37 ............................. TATTCTAAAAACTCTTCAATTATTAATCTTTTTGTTG 1635050 29 100.0 36 ............................. TCTAATCAAGTAATTTATATTTGACTTGAGAGGAGG 1634985 29 100.0 37 ............................. TTAAGAATTACTAGAACACTAACAAGTAGTACAGATG 1634919 29 100.0 38 ............................. TTAGATAAAAATGATAAAGCTATATTTAATGGTAGAGC 1634852 29 100.0 35 ............................. CGTTTAGACTTGCTTTTAACTTTATTAATAACCGT 1634788 29 100.0 36 ............................. TATAAAATAAAATCATCACTATCAATACTAAATTCT 1634723 29 100.0 37 ............................. GTTGAGAAAGTGCAAGGTGTCAATAGAAAAGTTAAAG 1634657 29 100.0 37 ............................. CCAGTTCCGTTAATAAAATCAAAATCTAACATTAAGC 1634591 29 100.0 37 ............................. TTTAATAGCTCCTTTCCGTACAAAATAAAAAAGCACC 1634525 29 100.0 35 ............................. AATAAATATAAAAAAGTTTTAGAATTATTAGAACA 1634461 29 100.0 36 ............................. GTTAAATTCTTTTTATAAGCAATTCTCACATGCTTA 1634396 29 100.0 37 ............................. GGAAATGAAATAGTTGTTTCTGACACAGGTATTAGAA 1634330 29 100.0 36 ............................. ATATTTAAAATTATAGGAGAAGGAGAAATTAAACTC 1634265 29 100.0 36 ............................. TATATCAACTTGTACATTATGTTCAATAGAAACTTC 1634200 29 100.0 36 ............................. TTCTTAATGTGCAGGAAGAAGCTTGTAATATCATAT 1634135 29 100.0 36 ............................. ATATTTAAAGATGCTAAAATACAGATTAATGGCAAG 1634070 29 100.0 37 ............................. TTAGGAAGACAGAAATTACAAAGCGATAAATTAGCAG 1634004 29 96.6 37 .......................T..... TTATAAATTCCCAAACCTCTTTCTCATTACCTAATAC 1633938 29 100.0 38 ............................. AATGAAGACGATTATTTTTTAAGAGGAATATCTTCCGC 1633871 29 100.0 37 ............................. TTGCTATGACAATGCAGTATATTATTTTCTTTATACA 1633805 29 100.0 37 ............................. TAAAATGGCTATTATTCTGCGTAAAATACAGTTTTTG 1633739 29 100.0 36 ............................. GTAAAATTAGCAGATGGTAGAGAAGTAAATGTGAAG 1633674 29 100.0 37 ............................. TTTATACTTAAATGTTCTATCCTTATATAATTAATGT 1633608 29 100.0 36 ............................. TTATATTTGTGAAAAGAATGTACAATCAATGGATGC 1633543 29 100.0 37 ............................. GCGTATGATGGTTGTCTTGTAGAAATGCGAGATAAAG 1633477 29 100.0 37 ............................. CCACATCACTCATTTGGTAAAGTTAATAAGATATTAA 1633411 29 100.0 36 ............................. GGAACACATTACACTATTACTTAATCCAAAACTAAT 1633346 29 100.0 37 ............................. TACTAAACCTATAACATTGTAGCATTTATATATAATT 1633280 29 100.0 36 ............................. TTTCTTTATTTATTAAATTATATCTATTATCTTTTA 1633215 29 100.0 37 ............................. AAGAACTATTTTGATAATGCTGATACAGTTTTCTTTA 1633149 29 100.0 36 ............................. ACATATTTTGCTAAGTTAGGAGCACCGCCAGTAAGT 1633084 29 100.0 36 ............................. CTTGGCAATATTGAATTAGCAACAAAGTTCGAACCT 1633019 29 100.0 36 ............................. TCTAAGCATTTTTTTATGAGAATTATCTATATTTAA 1632954 29 100.0 36 ............................. TATACCCATTCATTACTTTCTTTAGACTTTCCTCTA 1632889 29 100.0 36 ............................. TACATTACTATAACTATCTACACAACCAGGAACACA 1632824 29 100.0 36 ............................. TTATTTCCTTTTGCTCTGTAGATCACTTTGTAATTT 1632759 29 100.0 38 ............................. CATGCAAAGCGTTAAGGCTAATACAAAGGATACAGTAG 1632692 29 100.0 36 ............................. ACTTTAGAAGTATTAAAATCTTTAGCAAATGCATTA 1632627 29 100.0 37 ............................. AAGATTGAAGGTGATAACATTGATTAAGAAACTAATT 1632561 29 100.0 35 ............................. TGTTTGGTAAACTTAAAATAGAAGATATTATAAAT 1632497 29 100.0 37 ............................. TTTAAGAGAGCATTTGAAGATTTATTGTATTTTATAA 1632431 29 100.0 37 ............................. ATTGGTAAATTACGAACTTTACCATCCGGTGGAGAAG 1632365 29 100.0 36 ............................. GATTCAATTTGATTAGCTTGTATGTGTTGAGATTCT 1632300 29 100.0 37 ............................. ATATACAACAAATTCAATTAGACAACAATGAAGAAAC 1632234 29 100.0 36 ............................. CATAAACTCAGACATAGTGCAGCTACAATGTACTTG 1632169 29 100.0 36 ............................. ACTACTAGAGGATTTAAAAATATAAAATAAAAAATA 1632104 29 100.0 37 ............................. GAAAGAGCTGCAAAATTTGTTGGAAGACAAATGTTGG 1632038 29 96.6 37 .......................T..... TTATAAATTCCCAAACCTCTTTCTCATTACCTAATAC 1631972 29 100.0 38 ............................. AATGAAGACGATTATTTTTTAAGAGGAATATCTTCCGC 1631905 29 100.0 36 ............................. GGTTTTAATTCAGCTTCACTAACTTCTATACCTTCT 1631840 29 96.6 37 .......C..................... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 1631774 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ======================================= ================== 77 29 99.6 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGACTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGAACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGCTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTAAATCTAATAGCTCACTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //